ArticleJournal of experimental botany2015
Soybean kinome: functional classification and gene expression patterns.
Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed, 50 citations in OpenAlex.
- Genome-Wide Identification and Expression Analysis of Kinase Proteins in Land Plants and Their Expression in Gossypium hirsutum Under Salt Stress.Molecular biotechnology · 2026Article
- Whole genome sequencing reveals transcriptional and translational elements potentially regulating biotic and abiotic stress responses in cowpea.Scientific reports · 2025Article
- Genome-wide characterization of the sunflower kinome: classification, evolutionary analysis and expression patterns under different stresses.Frontiers in plant science · 2024Article
- Functional annotation of proteins for signaling network inference in non-model species.Nature communications · 2023Article
- Soybean gene co-expression network analysis identifies two co-regulated gene modules associated with nodule formation and development.Molecular plant pathology · 2023Article
- The rubber tree kinome: Genome-wide characterization and insights into coexpression patterns associated with abiotic stress responses.Frontiers in plant science · 2023Article
- Article
- RLPredictiOme, a Machine Learning-Derived Method for High-Throughput Prediction of Plant Receptor-like Proteins, Reveals Novel Classes of Transmembrane Receptors.International journal of molecular sciences · 2022Article
- Genome wide study of cysteine rich receptor like proteins in Gossypium sp.Scientific reports · 2022Article
- Kinase-dead mutation: A novel strategy for improving soybean resistance to soybean cyst nematode Heterodera glycines.Molecular plant pathology · 2022Article
- Insights into the regulation of wild soybean tolerance to salt-alkaline stress.Frontiers in plant science · 2022Review
- TILLING-by-SequencingCells · 2021Article
- Orthology and synteny analysis of receptor-like kinases "RLK" and receptor-like proteins "RLP" in legumes.BMC genomics · 2021Article
- Pecan kinome: classification and expression analysis of all protein kinases inForestry research · 2021Article
- The Cowpea Kinome: Genomic and Transcriptomic Analysis Under Biotic and Abiotic Stresses.Frontiers in plant science · 2021Article
- The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns.Frontiers in plant science · 2021Article
- The wild strawberry kinome: identification, classification and transcript profiling of protein kinases during development and in response to gray mold infection.BMC genomics · 2020Article
- A pathogenesis-related protein GmPR08-Bet VI promotes a molecular interaction between the GmSHMT08 and GmSNAP18 in resistance to Heterodera glycines.Plant biotechnology journal · 2020Article
- Genome reorganization of the GmSHMT gene family in soybean showed a lack of functional redundancy in resistance to soybean cyst nematode.Scientific reports · 2019Article
- The kinome of pineapple: catalog and insights into functions in crassulacean acid metabolism plants.BMC plant biology · 2018Article
Corrections and comments
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The protein kinase (PK) gene family is one of the largest and most highly conserved gene families in plants and plays a role in nearly all biological functions. While a large number of genes have been predicted to encode PKs in soybean, a comprehensive functional classification and global analysis of expression patterns of this large gene family is lacking. In this study, we identified the entire soybean PK repertoire or kinome, which comprised 2166 putative PK genes, representing 4.67% of all soybean protein-coding genes. The soybean kinome was classified into 19 groups, 81 families, and 122 subfamilies. The receptor-like kinase (RLK) group was remarkably large, containing 1418 genes. Collinearity analysis indicated that whole-genome segmental duplication events may have played a key role in the expansion of the soybean kinome, whereas tandem duplications might have contributed to the expansion of specific subfamilies. Gene structure, subcellular localization prediction, and gene expression patterns indicated extensive functional divergence of PK subfamilies. Global gene expression analysis of soybean PK subfamilies revealed tissue- and stress-specific expression patterns, implying regulatory functions over a wide range of developmental and physiological processes. In addition, tissue and stress co-expression network analysis uncovered specific subfamilies with narrow or wide interconnected relationships, indicative of their association with particular or broad signalling pathways, respectively. Taken together, our analyses provide a foundation for further functional studies to reveal the biological and molecular functions of PKs in soybean.
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