Evidence map›Paper›PMID 25614625›Full record

ArticleThe Journal of biological chemistry2015

Exposure of neutralizing epitopes in the carboxyl-terminal domain of TcdB is altered by a proximal hypervariable region.

Jason L Larabee, Aleze Krumholz, Jonathan J Hunt, Jordi M Lanis, Jimmy D Ballard

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 26 citations in OpenAlex.

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  3. Mouse monoclonal antibodies againstInfection and immunity · 2025
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  7. Polyamines and hypusination are important forInfection and immunity · 2023
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  8. Review
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  11. Article
  12. Article
  13. Article
  14. Article
  15. Structure of the full-length Clostridium difficile toxin B.Nature structural & molecular biology · 2019
    Article
  16. Toxin B Variants fromToxins · 2019
    Article
  17. Article
  18. Review
  19. Cell-penetrating peptides derived fromThe Journal of biological chemistry · 2018
    Article
  20. The Conserved Cys-2232 inFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jason L LarabeeFrom the Department of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104.
Aleze KrumholzFrom the Department of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104.
Jonathan J HuntFrom the Department of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104.
Jordi M LanisFrom the Department of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104.
Jimmy D BallardFrom the Department of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104 jimmy-ballard@ouhsc.edu.
University of Oklahoma Health Sciences Center · US

Funding

Differential Effects of TcdB1 and TcdB2 in C. difficile diseaseR01AI119048 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI BALLARD, JIMMY D. · 2015 to 2024
$3.8M
Systemic events in Clostridium difficile associated diseaseR01HL084489 · NHLBI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI BALLARD, JIMMY D. · 2007 to 2011
$1.8M
NHLBI NIH HHS R01 HL084489NHLBI NIH HHS R01HL084489NIAID NIH HHS R01 AI119048
6 · The paper itself

Abstract

The sequence, activity, and antigenicity of TcdB varies between different strains of Clostridium difficile. As a result, ribotype-specific forms of TcdB exhibit different toxicities and are not strongly cross-neutralized. Using a combination of biochemical and immunological approaches, we compared two important variants of TcdB (TcdB012 and TcdB027) to identify the mechanisms through which sequence differences alter epitopes and activity of the toxin. These analyses led to the discovery of a critical variation in the 1753-1851 (B2') region of TcdB, which affects the exposure of neutralizing epitopes in the toxin. Sequence comparisons found that the B2' region exhibits only 77% identity and is the most variable sequence between the two forms of TcdB. A combination of biochemical, analytical, and mutagenesis experiments revealed that the B2' region promotes protein-protein interactions. These interactions appear to shield neutralizing epitopes that would otherwise be exposed in the toxin, an event found to be less prominent in TcdB012 due to sequence differences in the 1773-1780 and 1791-1798 regions of the B2' domain. When the carboxyl-terminal domains of TcdB012 and TcdB027 are swapped, neutralization experiments suggest that the amino terminus of TcdB interacts with the B2' region and impacts the exposure of neutralizing epitopes in the carboxyl terminus. Collectively, these data suggest that variations in the B2' region affect protein-protein interactions within TcdB and that these interactions influence the exposure of neutralizing epitopes.

Indexed as

Amino Acid SequenceAnimalsAntibodies, NeutralizingBacterial ProteinsBacterial ToxinsCHO CellsClostridioides difficileCricetulusEnterocolitis, PseudomembranousEpitopesHumansMolecular Sequence DataSequence AlignmentAntibodies, NeutralizingBacterial ProteinsBacterial ToxinsEpitopestoxB protein, Clostridium difficileAntibodyBacterial PathogenesisBacterial ToxinClostridium difficileInfectious DiseaseRibotype 027TcdBToxin

Identifiers

PMID25614625
PMCPMC4358121
OpenAlexW2060764319

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.