Evidence map›Paper›PMID 25614460›Full record

ArticleFree radical biology & medicine2015

Whole transcriptome analysis reveals an 8-oxoguanine DNA glycosylase-1-driven DNA repair-dependent gene expression linked to essential biological processes.

Leopoldo Aguilera-Aguirre, Koa Hosoki, Attila Bacsi, Zsolt Radák, Thomas G Wood, Steven G Widen, Sanjiv Sur, Bill T Ameredes, Alfredo Saavedra-Molina, Allan R Brasier and 2 more

Open access · greenAbstract read
In one paragraph

Article in Free radical biology & medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. The Relevance of G-Quadruplexes for DNA Repair.International journal of molecular sciences · 2021
    Review
  6. Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. The roles of base excision repair enzyme OGG1 in gene expression.Cellular and molecular life sciences : CMLS · 2018
    Review
  12. Article
  13. Pollen-induced oxidative DNA damage response regulates miRNAs controlling allergic inflammation.American journal of physiology. Lung cellular and molecular physiology · 2017
    Article
  14. Article
  15. Article
  16. G-quadruplex-forming promoter sequences enable transcriptional activation in response to oxidative stress.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Article
  18. Article
  19. Pathophysiology of bronchoconstriction: role of oxidatively damaged DNA repair.Current opinion in allergy and clinical immunology · 2016
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Leopoldo Aguilera-AguirreDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Koa HosokiDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, TX 77555, USA.
Attila BacsiDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Zsolt RadákDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Thomas G WoodSealy Center for Molecular Medicine, University of Texas Medical Branch, Galveston, TX 77555, USA; Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Steven G WidenDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Sanjiv SurDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, TX 77555, USA; Sealy Center for Molecular Medicine, University of Texas Medical Branch, Galveston, TX 77555, USA.
Bill T AmeredesDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, TX 77555, USA.
Alfredo Saavedra-MolinaDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Allan R BrasierDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, TX 77555, USA; Sealy Center for Molecular Medicine, University of Texas Medical Branch, Galveston, TX 77555, USA.
Xueqing BaDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Istvan BoldoghDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77555, USA; Sealy Center for Molecular Medicine, University of Texas Medical Branch, Galveston, TX 77555, USA. Electronic address: sboldogh@utmb.edu.
The University of Texas Medical Branch at Galveston · US

Funding

Virus, Tissue Culture and ImmunoassayP01AI062885 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI CASOLA, ANTONELLA · 2005 to 2022
$23.9M
Synthetic Organic Chemistry CoreP30ES006676 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ELFERINK, CORNELIS JOHAN · 1995 to 2017
$21.7M
Molecular Mechanisms of Environmental InjuryT32ES007254 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI AMEREDES, BILL T · 1990 to 2022
$6.6M
Linkage of Lung Inflammation to 8-oxoguanine and OGG1R01ES018948 · NIEHS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BOLDOGH, ISTVAN STEVEN · 2010 to 2014
$1.5M
NHLBI NIH HHS N01HV00245NIAID NIH HHS AI062885NIAID NIH HHS P01 AI062885NIEHS NIH HHS P30 ES006676NIEHS NIH HHS R01 ES018948NIEHS NIH HHS R01ES018948NIEHS NIH HHS T32 ES007254NIEHS NIH HHS T32ES007254-22
6 · The paper itself

Abstract

Reactive oxygen species inflict oxidative modifications on various biological molecules, including DNA. One of the most abundant DNA base lesions, 8-oxo-7,8-dihydroguanine (8-oxoG) is repaired by 8-oxoguanine DNA glycosylase-1 (OGG1) during DNA base excision repair (OGG1-BER). 8-OxoG accumulation in DNA has been associated with various pathological and aging processes, although its role is unclear. The lack of OGG1-BER in Ogg1(-/-) mice resulted in decreased inflammatory responses and increased susceptibility to infections and metabolic disorders. Therefore, we proposed that OGG1 and/or 8-oxoG base may have a role in immune and homeostatic processes. To test our hypothesis, we challenged mouse lungs with OGG1-BER product 8-oxoG base and changes in gene expression were determined by RNA sequencing and data were analyzed by Gene Ontology and statistical tools. RNA-Seq analysis identified 1592 differentially expressed (≥ 3-fold change) transcripts. The upregulated mRNAs were related to biological processes, including homeostatic, immune-system, macrophage activation, regulation of liquid-surface tension, and response to stimulus. These processes were mediated by chemokines, cytokines, gonadotropin-releasing hormone receptor, integrin, and interleukin signaling pathways. Taken together, these findings point to a new paradigm showing that OGG1-BER plays a role in various biological processes that may benefit the host, but when in excess could be implicated in disease and/or aging processes.

Indexed as

DNA RepairTranscriptomeAdministration, IntranasalAnimalsBronchoalveolar Lavage FluidDNADNA GlycosylasesFemaleGene Expression ProfilingGene Expression RegulationGuanineLungMetabolic Networks and PathwaysMiceMice, Inbred BALB CMolecular Sequence Annotation7,8-dihydro-8-oxoguanineDNADNA GlycosylasesGuanineOgg1 protein, mouseReactive Oxygen Species8-OxoguanineBiological processesGene expressionOGG1-BER

Identifiers

PMID25614460
PMCPMC4359954
OpenAlexW1978407905

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.