Evidence map›Paper›PMID 25612137›Full record

ArticleMolecular microbiology2015

Rot is a key regulator of Staphylococcus aureus biofilm formation.

Joe M Mootz, Meredith A Benson, Cortney E Heim, Heidi A Crosby, Jeffrey S Kavanaugh, Paul M Dunman, Tammy Kielian, Victor J Torres, Alexander R Horswill

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 80 citations in OpenAlex.

  1. Review
  2. D-alanine aminotransferase (Dat) promotesbioRxiv : the preprint server for biology · 2026
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  3. Virulence Profiling of Multidrug-Resistant ClinicalMicrobial drug resistance (Larchmont, N.Y.) · 2026
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  4. Biofilm-associated genes inFrontiers in microbiology · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Microorganisms · 2025
    Review
  9. Antimicrobial effects of essential oil fromFrontiers in cellular and infection microbiology · 2025
    Article
  10. Presence and mRNA Expression of theIndian journal of microbiology · 2024
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  11. Infection and immunity · 2024
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  12. Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. The major role ofVirulence · 2023
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  14. Journal of bacteriology · 2023
    Article
  15. Antimicrobial Treatment ofAntibiotics (Basel, Switzerland) · 2023
    Review
  16. Review
  17. A Review of Biofilm Formation ofAntibiotics (Basel, Switzerland) · 2022
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Joe M MootzDepartment of Microbiology, Roy J. and Lucille A. Carver College of Medicine, University of Iowa, Iowa City, IA, 52242, USA.
Meredith A Benson
Cortney E Heim
Heidi A Crosby
Jeffrey S Kavanaugh
Paul M Dunman
Tammy Kielian
Victor J Torres
Alexander R Horswill
University of Iowa · USNew York University · USUniversity of Nebraska Medical Center · USUniversity of Rochester · US

Funding

The S. aureus biofilm lifecycleP01AI083211 · NIAID · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI BAYLES, KENNETH W. · 2009 to 2023
$32.1M
TRAINING IN MECHANISMS OF PARASITISMT32AI007511 · NIAID · UNIVERSITY OF IOWA · PI BUTLER, NOAH SULLIVAN, WEBER, MARY · 1996 to 2025
$8.1M
Quorum sensing-dependent interactions with biofilms and innate immunity defensesR01AI078921 · NIAID · UNIVERSITY OF IOWA · PI HORSWILL, ALEXANDER R · 2008 to 2012
$2.0M
Mechanistic studies of rot-mediated regulation of Staphylococcus aureus virulenceR21AI101533 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI TORRES, VICTOR J. · 2013 to 2014
$466k
NIAID NIH HHS AI07511 T32NIAID NIH HHS AI078921NIAID NIH HHS AI083211NIAID NIH HHS AI101533NIAID NIH HHS P01 AI083211NIAID NIH HHS R01 AI078921NIAID NIH HHS R21 AI101533NIAID NIH HHS T32 AI007511
6 · The paper itself

Abstract

Staphylococcus aureus is a significant cause of chronic biofilm infections on medical implants. We investigated the biofilm regulatory cascade and discovered that the repressor of toxins (Rot) is part of this pathway. A USA300 community-associated methicillin-resistant S. aureus strain deficient in Rot was unable to form a biofilm using multiple different assays, and we found rot mutants in other strain lineages were also biofilm deficient. By performing a global analysis of transcripts and protein production controlled by Rot, we observed that all the secreted protease genes were up-regulated in a rot mutant, and we hypothesized that this regulation could be responsible for the biofilm phenotype. To investigate this question, we determined that Rot bound to the protease promoters, and we observed that activity levels of these enzymes, in particular the cysteine proteases, were increased in a rot mutant. By inactivating these proteases, biofilm capacity was restored to the mutant, demonstrating they are responsible for the biofilm negative phenotype. Finally, we tested the rot mutant in a mouse catheter model of biofilm infection and observed a significant reduction in biofilm burden. Thus S. aureus uses the transcription factor Rot to repress secreted protease levels in order to build a biofilm.

Indexed as

BiofilmsAnimalsBacterial ProteinsGene Expression Regulation, BacterialHumansMaleMiceMice, Inbred C57BLPeptide HydrolasesPromoter Regions, GeneticRepressor ProteinsStaphylococcal InfectionsStaphylococcus aureusBacterial ProteinsPeptide HydrolasesRepressor Proteinsrot protein, Staphylococcus aureus

Identifiers

PMID25612137
PMCPMC4467170
OpenAlexW2133095398

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.