Evidence map›Paper›PMID 25611855›Full record

ArticlePloS one2015

Novel exons and splice variants in the human antibody heavy chain identified by single cell and single molecule sequencing.

Christopher Vollmers, Lolita Penland, Jad N Kanbar, Stephen R Quake

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. The analysis of clonal expansions in normal and autoimmune B cell repertoires.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Christopher VollmersDept. of Bioengineering, Stanford University, Stanford, California, United States of America.
Lolita PenlandDept. of Bioengineering, Stanford University, Stanford, California, United States of America.
Jad N KanbarHoward Hughes Medical Institute, Chevy Chase, Maryland, United States of America.
Stephen R QuakeDept. of Bioengineering, Stanford University, Stanford, California, United States of America; Dept. of Applied Physics, Stanford University, Stanford, California, United States of America; Howard Hughes Medical Institute, Chevy Chase, Maryland, United States of America.

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Howard Hughes Medical InstituteNIAID NIH HHS U19 AI057229
6 · The paper itself

Abstract

Antibody heavy chains contain a variable and a constant region. The constant region of the antibody heavy chain is encoded by multiple groups of exons which define the isotype and therefore many functional characteristics of the antibody. We performed both single B cell RNAseq and long read single molecule sequencing of antibody heavy chain transcripts and were able to identify novel exons for IGHA1 and IGHA2 as well as novel isoforms for IGHM antibody heavy chain.

Indexed as

B-LymphocytesExonsRNA SplicingSequence Analysis, RNAHumansImmunoglobulin Heavy ChainsImmunoglobulin Heavy Chains

Identifiers

PMID25611855
PMCPMC4303433

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.