Evidence map›Paper›PMID 25611576›Full record

ArticleJournal of microscopy2015

Array tomography: characterizing FAC-sorted populations of zebrafish immune cells by their 3D ultrastructure.

Irene Wacker, Peter Chockley, Carolin Bartels, Waldemar Spomer, Andreas Hofmann, Ulrich Gengenbach, Sachin Singh, Marlene Thaler, Clemens Grabher, Rasmus R Schröder

Abstract read
In one paragraph

Article in Journal of microscopy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Morphomics via next-generation electron microscopy.Journal of molecular cell biology · 2024
    Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Q&A: Array tomography.BMC biology · 2018
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Irene WackerCentre for Advanced Materials, Universität Heidelberg, Heidelberg, Germany.
Peter ChockleyInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, Karlsruhe, Germany.
Carolin BartelsCentre for Advanced Materials, Universität Heidelberg, Heidelberg, Germany.
Waldemar SpomerHeidelberg Karlsruhe Research Partnership, Heidelberg/Karlsruhe, Germany.
Andreas HofmannHeidelberg Karlsruhe Research Partnership, Heidelberg/Karlsruhe, Germany.
Ulrich GengenbachHeidelberg Karlsruhe Research Partnership, Heidelberg/Karlsruhe, Germany.
Sachin SinghInstitute of Toxicology and Genetics, Karlsruhe Institute of Technology, Karlsruhe, Germany.
Marlene ThalerCarl Zeiss Microscopy GmbH, Oberkochen, Germany.
Clemens GrabherHeidelberg Karlsruhe Research Partnership, Heidelberg/Karlsruhe, Germany.
Rasmus R SchröderCentre for Advanced Materials, Universität Heidelberg, Heidelberg, Germany.

Funding

RESEARCH TRAINING IN EXPERIMENTAL IMMUNOPATHOLOGYT32AI007413 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Bethany B. Moore · 1993 to 2026
$9.8M
NIAID NIH HHS T32 AI007413
6 · The paper itself

Abstract

For 3D reconstructions of whole immune cells from zebrafish, isolated from adult animals by FAC-sorting we employed array tomography on hundreds of serial sections deposited on silicon wafers. Image stacks were either recorded manually or automatically with the newly released ZEISS Atlas 5 Array Tomography platform on a Zeiss FEGSEM. To characterize different populations of immune cells, organelle inventories were created by segmenting individual cells. In addition, arrays were used for quantification of cell populations with respect to the various cell types they contained. The detection of immunological synapses in cocultures of cell populations from thymus or WKM with cancer cells helped to identify the cytotoxic nature of these cells. Our results demonstrate the practicality and benefit of AT for high-throughput ultrastructural imaging of substantial volumes.

Indexed as

AdultAnimalsCell Line, TumorCell MovementCells, CulturedCell SeparationFlow CytometryHumansImaging, Three-DimensionalImmune SystemImmunological SynapsesLymphocytesThymus GlandTomographyZebrafish3D reconstructionarray tomographycytotoxic cellsimmunological synapselarge volume ultrastructurezebrafish

Identifiers

PMID25611576
PMCPMC4670706

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.