Evidence map›Paper›PMID 25611510›Full record

ArticleNeuron2015

Genome-wide functional analysis of CREB/long-term memory-dependent transcription reveals distinct basal and memory gene expression programs.

Vanisha Lakhina, Rachel N Arey, Rachel Kaletsky, Amanda Kauffman, Geneva Stein, William Keyes, Daniel Xu, Coleen T Murphy

Open access · bronzeAbstract read
In one paragraph

Article in Neuron, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 162 citations in OpenAlex.

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  10. S-Nitrosylation of CRTC1 in Alzheimer's disease impairs CREB-dependent gene expression induced by neuronal activity.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  11. Unzipping the defense: a comprehensive review on bZIP transcription factors inFrontiers in cellular and infection microbiology · 2025
    Review
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  20. Review

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Vanisha LakhinaDepartment of Molecular Biology & LSI Genomics, Princeton University, Princeton, NJ 08544, USA.
Rachel N AreyDepartment of Molecular Biology & LSI Genomics, Princeton University, Princeton, NJ 08544, USA.
Rachel KaletskyDepartment of Molecular Biology & LSI Genomics, Princeton University, Princeton, NJ 08544, USA.
Amanda KauffmanDepartment of Molecular Biology & LSI Genomics, Princeton University, Princeton, NJ 08544, USA.
Geneva SteinDepartment of Molecular Biology & LSI Genomics, Princeton University, Princeton, NJ 08544, USA.
William KeyesDepartment of Molecular Biology & LSI Genomics, Princeton University, Princeton, NJ 08544, USA.
Daniel XuDepartment of Molecular Biology & LSI Genomics, Princeton University, Princeton, NJ 08544, USA.
Coleen T MurphyDepartment of Molecular Biology & LSI Genomics, Princeton University, Princeton, NJ 08544, USA. Electronic address: ctmurphy@princeton.edu.
Princeton University · US

Funding

Molecular Mechanisms Regulating Age-Related Cognitive Decline in C. elegansR01AG034446 · NIA · PRINCETON UNIVERSITY · PI MURPHY, COLEEN TARA · 2009 to 2019
$3.1M
Identifying postsynaptic regulators of long-term memory in Caenorhabditis elegansF32AG046106 · NIA · PRINCETON UNIVERSITY · PI AREY, RACHEL NICOLE · 2014 to 2017
$167k
NIA NIH HHS F32 AG046106NIA NIH HHS R01 AG034446
6 · The paper itself

Abstract

Induced CREB activity is a hallmark of long-term memory, but the full repertoire of CREB transcriptional targets required specifically for memory is not known in any system. To obtain a more complete picture of the mechanisms involved in memory, we combined memory training with genome-wide transcriptional analysis of C. elegans CREB mutants. This approach identified 757 significant CREB/memory-induced targets and confirmed the involvement of known memory genes from other organisms, but also suggested new mechanisms and novel components that may be conserved through mammals. CREB mediates distinct basal and memory transcriptional programs at least partially through spatial restriction of CREB activity: basal targets are regulated primarily in nonneuronal tissues, while memory targets are enriched for neuronal expression, emanating from CREB activity in AIM neurons. This suite of novel memory-associated genes will provide a platform for the discovery of orthologous mammalian long-term memory components.

Indexed as

Memory, Long-TermAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCyclic AMP Response Element-Binding ProteinGene Expression ProfilingGene Expression RegulationGene Expression Regulation, DevelopmentalHippocampusLearningMemoryNeuronsTranscription FactorsCaenorhabditis elegans ProteinsCyclic AMP Response Element-Binding ProteinTranscription Factors

Identifiers

PMID25611510
PMCPMC4340687
OpenAlexW1972251056

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.