Evidence map›Paper›PMID 25611149›Full record

ArticleAIDS (London, England)2015

Cerebrospinal fluid metabolomics implicate bioenergetic adaptation as a neural mechanism regulating shifts in cognitive states of HIV-infected patients.

Alex M Dickens, Daniel C Anthony, Reena Deutsch, Michelle M Mielke, Timothy D W Claridge, Igor Grant, Donald Franklin, Debra Rosario, Thomas Marcotte, Scott Letendre and 2 more

Abstract read
In one paragraph

Article in AIDS (London, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 69 citations in OpenAlex.

  1. Metabolic basis of post-infectious sequelae after Ebola virus disease.Metabolomics : Official journal of the Metabolomic Society · 2026
    Article
  2. Article
  3. Metabolic Basis of Post-Infectious Sequelae After Ebola Virus Disease.medRxiv : the preprint server for health sciences · 2026
    Article
  4. Metabolomics of HIV in the Modern cART Era.Advances in experimental medicine and biology · 2026
    Review
  5. Article
  6. Article
  7. Frontiers in neuroscience · 2024
    Article
  8. Review
  9. Article
  10. Article
  11. Persistent biofluid small molecule alterations induced bybioRxiv : the preprint server for biology · 2023
    Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Plasma Citrate and Succinate Are Associated With Neurocognitive Impairment in Older People With HIV.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Alex M DickensaDepartment of Pharmacology, University of Oxford, Oxford, UK bDepartment of Neurology cPsychiatry, Johns Hopkins University, Baltimore, Maryland dHIV Neurobehavioral Research Program and Department of Psychiatry, School of Medicine, University of California, San Diego, La Jolla, California eDivision of Epidemiology, Department of Health Sciences Research and Department of Neurology College of Medicine, Mayo Clinic, Rochester, Minnesota, USA fDepartment of Chemistry, University of Oxford, UK.
Daniel C Anthony
Reena Deutsch
Michelle M Mielke
Timothy D W Claridge
Igor Grant
Donald Franklin
Debra Rosario
Thomas Marcotte
Scott Letendre
Justin C McArthur
Norman J Haughey
University of California, San Diego · USUniversity of Oxford · GBJohns Hopkins University · USMayo Clinic · US

Funding

STRUCTURAL NEUROIMAGING COREP30MH062512 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAVID J MOORE · 2001 to 2026
$50.4M
Therapeutic CoreP30MH075673 · NIMH · JOHNS HOPKINS UNIVERSITY · PI Leah Helane Rubin · 2006 to 2026
$33.2M
Mechanisms of Neuroinflammation in HANDR01MH077542 · NIMH · JOHNS HOPKINS UNIVERSITY · PI HAUGHEY, NORMAN J · 2007 to 2016
$3.4M
Longitudinal Study of Lipids and APOE in the Development of AD and AD PathologyU01AG037526 · NIA · MAYO CLINIC ROCHESTER · PI MIELKE, MICHELLE M · 2010 to 2014
$2.3M
Altered Amyloid Processing HIVR01MH096636 · NIMH · JOHNS HOPKINS UNIVERSITY · PI HAUGHEY, NORMAN J · 2013 to 2017
$2.0M
Midcareer Investigator Award in Patient-Oriented NeuroAIDS ResearchK24MH097673 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LETENDRE, SCOTT L · 2013 to 2017
$917k
Combinational Systems Analyses to Identify Neural Circuits Perturbed by HIVR03MH103985 · NIMH · JOHNS HOPKINS UNIVERSITY · PI HAUGHEY, NORMAN J · 2014 to 2015
$162k
CNS HIV ANTI-RETROVIRAL THERAPY EFFECTS RESEARCH /CHARTER/ -278022005-278022005N01MH022005 · NIMH · UNIVERSITY OF CA -SAN DIEGO · PI GRANT, IGOR · 2003 to 2006
–
NIA NIH HHS R01 AG37526NIA NIH HHS U01 AG037526NIMH NIH HHS K24 MH097673NIMH NIH HHS N01 MH022005NIMH NIH HHS P01MH075673NIMH NIH HHS P30 MH062512NIMH NIH HHS P30 MH075673NIMH NIH HHS R01 MH077542NIMH NIH HHS R01MH077542NIMH NIH HHS R01 MH096636NIMH NIH HHS R01MH096636NIMH NIH HHS R03 MH103985
6 · The paper itself

Abstract

objectivesTo identify prognostic surrogate markers for change in cognitive states of HIV-infected patients.

designLongitudinal cerebrospinal fluid (CSF) samples were collected from 98 HIV-infected patients identified by temporal change in cognitive states classified as normal, stably impaired, improving and worsening.

methodsThe metabolic composition of CSF was analysed using H nuclear magnetic resonance (H NMR) spectroscopy that focused on energy metabolites. Metabolic biomarkers for cognitive states were identified using multivariate partial least squares regression modelling of the acquired spectra, combined with nonparametric analyses of metabolites with clinical features.

resultsMultivariate modelling and cross-validated recursive partitioning identified several energy metabolites that, when combined with clinical variables, classified patients based on change in neurocognitive states. Prognostic identification for worsening was achieved with four features that included no change in a detectable plasma viral load, elevated citrate and acetate; decreased creatine, to produce a model with a predictive accuracy of 92%, sensitivity of 88% and 96% specificity. Prognosis for improvement contained seven features that included first visit age less than 47 years, new or continued use of antiretrovirals, elevated glutamine and glucose; decreased myo-inositol, β-glucose and creatinine to generate a model with a predictive accuracy of 92%, sensitivity of 100% and specificity of 84%.

conclusionThese CSF metabolic results suggest that worsening cognitive status in HIV-infected patients is associated with increased aerobic glycolysis, and improvements in cognitive status are associated with a shift to anaerobic glycolysis. Dietary, lifestyle and pharmacologic interventions that promote anaerobic glycolysis could protect the brain in setting of HIV infection with combined antiretroviral therapy.

Indexed as

MetabolomeAIDS Dementia ComplexBiomarkersCerebrospinal FluidEnergy MetabolismGlycolysisHIV InfectionsHumansLongitudinal StudiesMagnetic Resonance SpectroscopyPrognosisBiomarkers

Identifiers

PMID25611149
PMCPMC4340743
OpenAlexW2322381093

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.