ArticleFrontiers in plant science2014
A high-density genetic map of cucumber derived from Specific Length Amplified Fragment sequencing (SLAF-seq).
Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.
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57 citing papers in PubMed.
- Construction of the First Genetic Linkage Map and QTL Analysis for Morphological Traits inPlants (Basel, Switzerland) · 2026Article
- Integrative QTL mapping and candidate gene analysis for main stem node number in soybean.BMC plant biology · 2025Article
- Research on the mining of candidate genes for pepper fruit color and development of SNP markers based on SLAF-seq technology.Scientific reports · 2025Article
- Identification of Quantitative Trait Loci for Node Number, Pod Number, and Seed Number in Soybean.International journal of molecular sciences · 2025Article
- Article
- Construction of the first high-density genetic linkage map and QTL mapping of flavonoid and leaf-size related traits in Epimedium.BMC plant biology · 2023Article
- Construction of a High-Density Recombination Bin-Based Genetic Map Facilitates High-Resolution Mapping of a Major QTL Underlying Anthocyanin Pigmentation in Eggplant.International journal of molecular sciences · 2022Article
- Construction of High-Density Genetic Map and Identification of a Bruchid Resistance Locus in Mung Bean (Frontiers in genetics · 2022Article
- Identification of quantitative trait loci for powdery mildew resistance in highly resistant cucumber (Breeding science · 2021Article
- Genome-Wide Association Study of Root and Shoot Related Traits in Spring Soybean (Frontiers in plant science · 2021Article
- QTL Mapping for Leaf Area of Tea Plants (Frontiers in plant science · 2021Article
- Novel stable QTLs identification for berry quality traits based on high-density genetic linkage map construction in table grape.BMC plant biology · 2020Article
- Construction of a high-density genetic linkage map and identification of gene controlling resistance to cucumber mosaic virus in Luffa cylindrica (L.) Roem. based on specific length amplified fragment sequencing.Molecular biology reports · 2020Article
- High-density SNP map facilitates fine mapping of QTLs and candidate genes discovery for Aspergillus flavus resistance in peanut (Arachis hypogaea).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Genome-based breeding approaches in major vegetable crops.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Review
- Identification of candidate genes for key fibre-related QTLs and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions.Plant biotechnology journal · 2020Article
- Genetic diversity and population structure of eddoe taro in China using genome-wide SNP markers.PeerJ · 2020Article
- Article
- QTL identification for seed weight and size based on a high-density SLAF-seq genetic map in peanut (Arachis hypogaea L.).BMC plant biology · 2019Article
- Transcriptome profiling reveals key genes related to astringency during cucumber fruit development.3 Biotech · 2019Article
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9 authors.
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Abstract
High-density genetic map provides an essential framework for accurate and efficient genome assembly and QTL fine mapping. Construction of high-density genetic maps appears more feasible since the advent of next-generation sequencing (NGS), which eases SNP discovery and high-throughput genotyping of large population. In this research, a high-density genetic map of cucumber (Cucumis sativus L.) was successfully constructed across an F2 population by a recently developed Specific Length Amplified Fragment sequencing (SLAF-seq) method. In total, 18.69 GB of data containing 93,460,000 paired-end reads were obtained after preprocessing. The average sequencing depth was 44.92 in the D8 (female parent), 42.16 in the Jin5-508 (male parent), and 5.01 in each progeny. 79,092 high-quality SLAFs were detected, of which 6784 SLAFs were polymorphic, and 1892 of the polymorphic markers met the requirements for constructing genetic map. The genetic map spanned 845.87 cm with an average genetic distance of 0.45 cm. It is a reliable linkage map for fine mapping and molecular breeding of cucumber for its high marker density and well-ordered markers.
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