Evidence map›Paper›PMID 25609429›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2015

Dimerization and phosphatase activity of calcyclin-binding protein/Siah-1 interacting protein: the influence of oxidative stress.

Agnieszka M Topolska-Woś, Steven M Shell, Ewa Kilańczyk, Roman H Szczepanowski, Walter J Chazin, Anna Filipek

Abstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Article
  6. S100A6 and Its Brain Ligands in Neurodegenerative Disorders.International journal of molecular sciences · 2020
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. The potential role of CacyBP/SIP in tumorigenesis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Agnieszka M Topolska-Woś*Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland; Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA; and International Institute of Molecular and Cell Biology, Warsaw, Poland.
Steven M Shell*Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland; Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA; and International Institute of Molecular and Cell Biology, Warsaw, Poland.
Ewa Kilańczyk*Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland; Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA; and International Institute of Molecular and Cell Biology, Warsaw, Poland.
Roman H Szczepanowski*Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland; Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA; and International Institute of Molecular and Cell Biology, Warsaw, Poland.
Walter J Chazin*Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland; Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA; and International Institute of Molecular and Cell Biology, Warsaw, Poland a.filipek@nencki.gov.pl walter.j.chazin@vanderbilt.edu.
Anna Filipek*Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland; Center for Structural Biology, Vanderbilt University, Nashville, Tennessee, USA; and International Institute of Molecular and Cell Biology, Warsaw, Poland a.filipek@nencki.gov.pl walter.j.chazin@vanderbilt.edu.
Vanderbilt University · USInstytut Biologii Doświadczalnej im. Marcelego Nenckiego · PLInternational Institute of Molecular and Cell Biology · PLPolish Academy of Sciences · PL

Funding

Structural Biology of U-box E3 Ubiquitin LigasesR01GM075156 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 2005 to 2013
$2.4M
NIGMS NIH HHS R01 GM075156NIGMS NIH HHS R01-GM075156
6 · The paper itself

Abstract

CacyBP/SIP [calcyclin-binding protein/Siah-1 [seven in absentia homolog 1 (Siah E3 ubiquitin protein ligase 1)] interacting protein] is a multifunctional protein whose activity includes acting as an ERK1/2 phosphatase. We analyzed dimerization of mouse CacyBP/SIP in vitro and in mouse neuroblastoma cell line (NB2a) cells, as well as the structure of a full-length protein. Moreover, we searched for the CacyBP/SIP domain important for dimerization and dephosphorylation of ERK2, and we analyzed the role of dimerization in ERK1/2 signaling in NB2a cells. Cell-based assays showed that CacyBP/SIP forms a homodimer in NB2a cell lysate, and biophysical methods demonstrated that CacyBP/SIP forms a stable dimer in vitro. Data obtained using small-angle X-ray scattering supported a model in which CacyBP/SIP occupies an anti-parallel orientation mediated by the N-terminal dimerization domain. Site-directed mutagenesis established that the N-terminal domain is indispensable for full phosphatase activity of CacyBP/SIP. We also demonstrated that the oligomerization state of CacyBP/SIP as well as the level of post-translational modifications and subcellular distribution of CacyBP/SIP change after activation of the ERK1/2 pathway in NB2a cells due to oxidative stress. Together, our results suggest that dimerization is important for controlling phosphatase activity of CacyBP/SIP and for regulating the ERK1/2 signaling pathway.

Indexed as

Oxidative StressProtein MultimerizationAmino Acid SequenceAnimalsBlotting, WesternCalcium-Binding ProteinsFlow CytometryFluorescent Antibody TechniqueImmunoprecipitationMiceMitogen-Activated Protein Kinase 1Mitogen-Activated Protein Kinase 3Molecular Sequence DataNeuroblastomaPhosphorylationProtein ConformationCacybp protein, mouseCalcium-Binding ProteinsMitogen-Activated Protein Kinase 1Mitogen-Activated Protein Kinase 3ProteinsSiah1a protein, mouseUbiquitin-Protein LigasesCacyBP/SIPERK1/2MAPK phosphataseNB2a cellsprotein structure

Identifiers

PMID25609429
PMCPMC4415008
OpenAlexW1994843840

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.