Evidence map›Paper›PMID 25609015›Full record

ArticleNature communications2015

Whole-exome sequencing reveals the mutational spectrum of testicular germ cell tumours.

Kevin Litchfield, Brenda Summersgill, Shawn Yost, Razvan Sultana, Karim Labreche, Darshna Dudakia, Anthony Renwick, Sheila Seal, Reem Al-Saadi, Peter Broderick and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed, 3 pooled it
18.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 3 syntheses or guidelines pooled it, 189 citations in OpenAlex.

  1. Guideline
  2. Pooled it
  3. Pooled it
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. PARP Inhibitors in Genitourinary Cancer: A New Paradigm Beyond Prostate Cancer.International journal of urology : official journal of the Japanese Urological Association · 2025
    Review
  12. Review
  13. A Thiopurine-like Mutagenic Process Defines TGCT Subtypes.bioRxiv : the preprint server for biology · 2025
    Article
  14. Article
  15. Article
  16. Germ cell tumors in children.Virchows Archiv : an international journal of pathology · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Review

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

Kevin LitchfieldDivision of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Brenda SummersgillDivisions of Molecular Pathology and Cancer Therapeutics, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Shawn YostDivision of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Razvan SultanaDivision of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Karim Labreche1] Division of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK [2] Inserm U 1127, CNRS UMR 7225, Sorbonne Universités, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, F-75019, Paris, France.
Darshna DudakiaDivision of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Anthony RenwickDivision of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Sheila SealDivision of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Reem Al-SaadiDivisions of Molecular Pathology and Cancer Therapeutics, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Peter BroderickDivision of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Nicholas C TurnerThe Breakthrough Breast Cancer Research Centre, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Richard S HoulstonDivision of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Robert HuddartAcademic Radiotherapy Unit, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Janet ShipleyDivisions of Molecular Pathology and Cancer Therapeutics, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.
Clare Turnbull1] Division of Genetics and Epidemiology, The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK [2] William Harvey Research Institute, Queen Mary University London, Charterhouse Square, London EC1M 6BQ, UK.
MRC Epidemiology Unit · GBBreast Cancer Now · GBSutton Hospital · GBWilliam Harvey Research Institute · GB

Funding

Cancer Research UK 15116Cancer Research UK A8362Cancer Research UK C1298/A8362
6 · The paper itself

Abstract

Testicular germ cell tumours (TGCTs) are the most common cancer in young men. Here we perform whole-exome sequencing (WES) of 42 TGCTs to comprehensively study the cancer's mutational profile. The mutation rate is uniformly low in all of the tumours (mean 0.5 mutations per Mb) as compared with common cancers, consistent with the embryological origin of TGCT. In addition to expected copy number gain of chromosome 12p and mutation of KIT, we identify recurrent mutations in the tumour suppressor gene CDC27 (11.9%). Copy number analysis reveals recurring amplification of the spermatocyte development gene FSIP2 (15.3%) and a 0.4 Mb region at Xq28 (15.3%). Two treatment-refractory patients are shown to harbour XRCC2 mutations, a gene strongly implicated in defining cisplatin resistance. Our findings provide further insights into genes involved in the development and progression of TGCT.

Indexed as

ExomeAdultChromosome AberrationsChromosomes, Human, Pair 12CisplatinCohort StudiesDisease ProgressionDNA-Binding ProteinsDNA Mutational AnalysisGene DosageGenes, Tumor SuppressorHumansInterleukin-24InterleukinsMaleMiddle AgedCisplatinDNA-Binding ProteinsInterleukin-24InterleukinsProto-Oncogene Proteins c-kitXRCC2 protein, human

Identifiers

PMID25609015
PMCPMC4338546
OpenAlexW2065461424

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.