Evidence map›Paper›PMID 25608590›Full record

ArticleInternational journal of environmental research and public health2015

Could a deletion in neuraminidase stalk strengthen human tropism of the novel avian influenza virus H7N9 in China, 2013?

Liang Chen, Feng Zhu, Chenglong Xiong, Zhijie Zhang, Lufang Jiang, Yue Chen, Genming Zhao, Qingwu Jiang

Open access · goldAbstract read
In one paragraph

Article in International journal of environmental research and public health, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Liang ChenDepartment of Sanitary Microbiology, School of Public Health, Fudan University, Shanghai 200032, China. chenliangfd@sina.com.
Feng ZhuIntensive Care Unit of Burn and Trauma Center, Changhai Hospital, Second Military Medical University, Shanghai 200433, China. z8160720@126.com.
Chenglong XiongDepartment of Sanitary Microbiology, School of Public Health, Fudan University, Shanghai 200032, China. xiongchenglong@fudan.edu.cn.
Zhijie ZhangKey Laboratory of Public Health Safety, Ministry of Education, Fudan University, Shanghai 200032, China. epistat@gmail.com.
Lufang JiangDepartment of Sanitary Microbiology, School of Public Health, Fudan University, Shanghai 200032, China. jianglufang@fudan.edu.cn.
Yue ChenDepartment of Epidemiology and Community Medicine, Faculty of Medicine, University of Ottawa, Ontario K1H 8M5, Canada. ychen@uottawa.ca.
Genming ZhaoKey Laboratory of Public Health Safety, Ministry of Education, Fudan University, Shanghai 200032, China. gmzhao@shmu.edu.cn.
Qingwu JiangKey Laboratory of Public Health Safety, Ministry of Education, Fudan University, Shanghai 200032, China. xiongchenglong1@sina.com.
Ministry of Education · KRFudan University · CNChanghai Hospital · CNShanghai Public Health Clinical Center · CNUniversity of Ottawa · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

unlabelledObjective. A novel avian influenza A virus (AIV) H7N9 subtype which emerged in China in 2013 caused worldwide concern. Deletion of amino-acids 69 to 73 in the neuraminidase stalk was its most notable characteristic. This study is aimed to discuss the tropism and virulence effects of this deletion.

methodsNeuraminidase gene sequences of N9 subtype were collected from NCBI and GISAID. MEGA6.0, Stata12.0, and UCSF Chimera were employed for sequence aligning, significance testing, and protein tertiary structure homology modeling.

resultsA total of 736 sequences were obtained; there were 81 human isolates of the novel AIV H7N9, of which 79 had the deletion. Among all the 654 avian origin sequences, only 43 had the deletion (p < 0.001). Tertiary structure displayed that the deletion obviously changed the spatial direction of neuraminidase.

conclusionsThe deletion in neuraminidase stalk could have strengthened human tropism of the novel AIV H7N9, as well as its virulence.

Indexed as

Base SequenceSequence DeletionChinaHumansInfluenza A Virus, H7N9 SubtypeInfluenza, HumanNeuraminidasePhylogenyProtein Structure, TertiarySequence AlignmentViral ProteinsViral TropismNeuraminidaseViral Proteins

Identifiers

PMID25608590
PMCPMC4306908
OpenAlexW2075869610

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.