Evidence map›Paper›PMID 25607374›Full record

ArticleAmerican journal of respiratory and critical care medicine2015

Rare variants in RTEL1 are associated with familial interstitial pneumonia.

Joy D Cogan, Jonathan A Kropski, Min Zhao, Daphne B Mitchell, Lynette Rives, Cheryl Markin, Errine T Garnett, Keri H Montgomery, Wendi R Mason, David F McKean and 18 more

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory and critical care medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 121 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
121citing papers in PubMed, 1 pooled it
19.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

121 citing papers in PubMed, 1 synthesis or guideline pooled it, 197 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Review
  4. Clonal Signatures of Telomere Biology Disorders.Current hematologic malignancy reports · 2026
    Review
  5. Review
  6. Genetic Familial Interstitial Lung Disease.Clinics in chest medicine · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Rare genetic interstitial lung diseases: a pictorial essay.European respiratory review : an official journal of the European Respiratory Society · 2024
    Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Lung transplant recipients with telomere-mediated pulmonary fibrosis have increased risk for hematologic complications.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2023
    Article
  20. Article

61 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 8 institutions in 3 countries.

Joy D Cogan1 Division of Medical Genetics and Genomic Medicine, Department of Pediatrics.
Jonathan A Kropski
Min Zhao
Daphne B Mitchell
Lynette Rives
Cheryl Markin
Errine T Garnett
Keri H Montgomery
Wendi R Mason
David F McKean
Julia Powers
Elissa Murphy
Lana M Olson
Leena Choi
Dong-Sheng Cheng
Elizabeth Marchani Blue
Lisa R Young
Lisa H Lancaster
Mark P Steele
Kevin K Brown
Marvin I Schwarz
Tasha E Fingerlin
David A Schwartz
William E Lawson
James E Loyd
Zhongming Zhao
John A Phillips
Timothy S Blackwell
Pulmonary and Allergy Associates · USNational Jewish Health · USPediatrics and Genetics · USUniversity of Washington · USBipar · FRCenter for Human Genetics · USUniversity of Colorado Denver · USVanderbilt University · US

Funding

VANDERBILT UNIVERSITY CTSA FOR PEDIATRIC RESEARCHUL1RR024975 · NCRR · VANDERBILT UNIVERSITY · PI BERNARD, GORDON RAPHAEL · 2007 to 2011
$45.7M
Mechanisms of Familial Pulmonary FibrosisP01HL092870 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BLACKWELL, TIMOTHY S. · 2010 to 2020
$21.6M
UW Center for Mendelian GenomicsU54HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, NICKERSON, DEBORAH A · 2012 to 2015
$20.0M
Role of Genetics in Idiopathic Pulmonary Fibrosis (IPF)R01HL097163 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI FINGERLIN, TASHA E., SCHWARTZ, DAVID ALBERT · 2009 to 2018
$16.4M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Vanderbilt Center for Undiagnosed Diseases (VCUD) - BiorepositoryU01HG007674 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI COGAN, JOY D, HAMID, RIZWAN · 2014 to 2022
$13.7M
Interdisciplinary Training Program in Lung ResearchT32HL094296 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ray Stokes Peebles · 2008 to 2026
$6.3M
Mechanisms of Pulmonary Fibrosis in Hermansky-Pudlak SyndromeR01HL119503 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI YOUNG, LISA R. · 2013 to 2021
$3.6M
Epithelial-Fibroblast Interactions in Lung FibrosisR01HL085317 · NHLBI · VANDERBILT UNIVERSITY · PI BLACKWELL, TIMOTHY S. · 2007 to 2015
$3.5M
Regulation of Fibrotic Remodeling by the Alveolar EpitheliumR01HL105479 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI LAWSON, WILLIAM E · 2011 to 2015
$2.2M
Functional Genetics in Idiopathic Pulmonary FibrosisR33HL120770 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI SCHWARTZ, DAVID ALBERT · 2016 to 2018
$1.6M
Regulation of pulmonary fibrosis by the sonic hedgehog pathwayI01BX001988 · VA · VETERANS HEALTH ADMINISTRATION · PI LAWSON, WILLIAM E · 2013 to 2016
–
BLRD VA I01 BX001988NCRR NIH HHS UL1 RR024975NHGRI NIH HHS 1U54HG006493NHGRI NIH HHS U01 HG007674NHGRI NIH HHS U54 HG006493NHGRI NIH HHS UM1 HG006493NHLBI NIH HHS HL0097163NHLBI NIH HHS HL085317NHLBI NIH HHS HL094296NHLBI NIH HHS HL105479NHLBI NIH HHS HL92870NHLBI NIH HHS P01 HL092870NHLBI NIH HHS R01 HL085317NHLBI NIH HHS R01 HL097163NHLBI NIH HHS R01 HL105479NHLBI NIH HHS R01 HL119503NHLBI NIH HHS R33 HL120770NHLBI NIH HHS T32 HL094296
6 · The paper itself

Abstract

rationaleUp to 20% of cases of idiopathic interstitial pneumonia cluster in families, comprising the syndrome of familial interstitial pneumonia (FIP); however, the genetic basis of FIP remains uncertain in most families.

objectivesTo determine if new disease-causing rare genetic variants could be identified using whole-exome sequencing of affected members from FIP families, providing additional insights into disease pathogenesis.

methodsAffected subjects from 25 kindreds were selected from an ongoing FIP registry for whole-exome sequencing from genomic DNA. Candidate rare variants were confirmed by Sanger sequencing, and cosegregation analysis was performed in families, followed by additional sequencing of affected individuals from another 163 kindreds. MEASUREMENTS AND MAIN

resultsWe identified a potentially damaging rare variant in the gene encoding for regulator of telomere elongation helicase 1 (RTEL1) that segregated with disease and was associated with very short telomeres in peripheral blood mononuclear cells in 1 of 25 families in our original whole-exome sequencing cohort. Evaluation of affected individuals in 163 additional kindreds revealed another eight families (4.7%) with heterozygous rare variants in RTEL1 that segregated with clinical FIP. Probands and unaffected carriers of these rare variants had short telomeres (<10% for age) in peripheral blood mononuclear cells and increased T-circle formation, suggesting impaired RTEL1 function.

conclusionsRare loss-of-function variants in RTEL1 represent a newly defined genetic predisposition for FIP, supporting the importance of telomere-related pathways in pulmonary fibrosis.

Indexed as

AgedAged, 80 and overDNA HelicasesFemaleGenetic VariationHeterozygoteHumansLungLung Diseases, InterstitialMaleMiddle AgedPedigreeTelomereDNA HelicasesRTEL1 protein, humangeneticsidiopathic pulmonary fibrosistelomere

Identifiers

PMID25607374
PMCPMC4384777
OpenAlexW2150044222

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.