Evidence map›Paper›PMID 25607364›Full record

ArticleNature2015

Structure of the key species in the enzymatic oxidation of methane to methanol.

Rahul Banerjee, Yegor Proshlyakov, John D Lipscomb, Denis A Proshlyakov

Abstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
12.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 288 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. OAngewandte Chemie (International ed. in English) · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. MoSNature communications · 2025
    Article
  10. Article
  11. Review
  12. 10Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Review
  14. Article
  15. Methane Oxidation to Methanol.Chemical reviews · 2023
    Review
  16. Determination of the iron(IV) local spin states of the Q intermediate of soluble methane monooxygenase by Kβ X-ray emission spectroscopy.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2022
    Article
  17. Article
  18. Article
  19. Generation of a μ-1,2-hydroperoxo FeNature communications · 2022
    Article
  20. Review

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Rahul Banerjee1] Department of Biochemistry, Molecular Biology &Biophysics, University of Minnesota, Minneapolis, Minnesota 55455, USA [2] Center for Metals in Biocatalysis, University of Minnesota, Minneapolis, Minnesota 55455, USA.
Yegor ProshlyakovDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA.
John D Lipscomb1] Department of Biochemistry, Molecular Biology &Biophysics, University of Minnesota, Minneapolis, Minnesota 55455, USA [2] Center for Metals in Biocatalysis, University of Minnesota, Minneapolis, Minnesota 55455, USA.
Denis A ProshlyakovDepartment of Chemistry, Michigan State University, East Lansing, Michigan 48824, USA.
Michigan State University · USUniversity of Minnesota · US

Funding

Methane Monoxygenase Structure and FunctionR01GM040466 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI LIPSCOMB, JOHN D · 1988 to 2009
$3.0M
Roles of protein structure and diiron cluster chemistry in oxygen activationR01GM100943 · NIGMS · UNIVERSITY OF MINNESOTA · PI LIPSCOMB, JOHN D · 2012 to 2015
$1.2M
Transient catalytic oxygen species in iron enzymesR01GM096132 · NIGMS · MICHIGAN STATE UNIVERSITY · PI PROSHLYAKOV, DENIS A · 2011 to 2014
$1.1M
NIGMS NIH HHS GM096132NIGMS NIH HHS GM100943NIGMS NIH HHS GM40466NIGMS NIH HHS R01 GM040466NIGMS NIH HHS R01 GM096132NIGMS NIH HHS R01 GM100943
6 · The paper itself

Abstract

Methane monooxygenase (MMO) catalyses the O2-dependent conversion of methane to methanol in methanotrophic bacteria, thereby preventing the atmospheric egress of approximately one billion tons of this potent greenhouse gas annually. The key reaction cycle intermediate of the soluble form of MMO (sMMO) is termed compound Q (Q). Q contains a unique dinuclear Fe(IV) cluster that reacts with methane to break an exceptionally strong 105 kcal mol(-1) C-H bond and insert one oxygen atom. No other biological oxidant, except that found in the particulate form of MMO, is capable of such catalysis. The structure of Q remains controversial despite numerous spectroscopic, computational and synthetic model studies. A definitive structural assignment can be made from resonance Raman vibrational spectroscopy but, despite efforts over the past two decades, no vibrational spectrum of Q has yet been obtained. Here we report the core structures of Q and the following product complex, compound T, using time-resolved resonance Raman spectroscopy (TR(3)). TR(3) permits fingerprinting of intermediates by their unique vibrational signatures through extended signal averaging for short-lived species. We report unambiguous evidence that Q possesses a bis-μ-oxo diamond core structure and show that both bridging oxygens originate from O2. This observation strongly supports a homolytic mechanism for O-O bond cleavage. We also show that T retains a single oxygen atom from O2 as a bridging ligand, while the other oxygen atom is incorporated into the product. Capture of the extreme oxidizing potential of Q is of great contemporary interest for bioremediation and the development of synthetic approaches to methane-based alternative fuels and chemical industry feedstocks. Insight into the formation and reactivity of Q from the structure reported here is an important step towards harnessing this potential.

Indexed as

BiocatalysisBiodegradation, EnvironmentalCarbonHydrogenIron CompoundsMethaneMethanolOxidation-ReductionOxygenOxygenasesOxygen IsotopesSpectrum Analysis, RamanVibrationCarboncompound Q (dinuclear Fe(IV))HydrogenIron CompoundsMethanemethane monooxygenaseMethanolOxygenOxygenasesOxygen Isotopes

Identifiers

PMID25607364
PMCPMC4429310
OpenAlexW1986097657

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.