Evidence map›Paper›PMID 25606714›Full record

ArticleACS chemical biology2015

Colloidal aggregation and the in vitro activity of traditional Chinese medicines.

Da Duan, Allison K Doak, Lyudmila Nedyalkova, Brian K Shoichet

Abstract read
In one paragraph

Article in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Review
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  19. Improving natural product research translation: From source to clinical trial.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Da Duan†Department of Pharmaceutical Chemistry, University of California, San Francisco, 1700 Fourth Street, San Francisco, California 94158-2550, United States.
Allison K Doak†Department of Pharmaceutical Chemistry, University of California, San Francisco, 1700 Fourth Street, San Francisco, California 94158-2550, United States.
Lyudmila Nedyalkova‡Leslie Dan Faculty of Pharmacy, Donnelly Center, University of Toronto, 144 College Street, Toronto, Ontario M5S3M2, Canada.
Brian K Shoichet†Department of Pharmaceutical Chemistry, University of California, San Francisco, 1700 Fourth Street, San Francisco, California 94158-2550, United States.

Funding

A Specific Mechanism for Non-Specific InhibitionR01GM071630 · NIGMS · UNIVERSITY OF TORONTO · PI SHOICHET, BRIAN K · 2004 to 2016
$3.6M
NIGMS NIH HHS GM71630NIGMS NIH HHS R01 GM071630
6 · The paper itself

Abstract

Traditional Chinese Medicines (TCMs) have been the sole source of therapeutics in China for two millennia. In recent drug discovery efforts, purified components of TCM formulations have shown activity in many in vitro assays, raising concerns of promiscuity. Here, we investigated 14 bioactive small molecules isolated from TCMs for colloidal aggregation. At concentrations commonly used in cell-based or biochemical assay conditions, eight of these compounds formed particles detectable by dynamic light scattering and showed detergent-reversible inhibition against β-lactamase and malate dehydrogenase, two counter-screening enzymes. When three of these compounds were tested against their literature-reported molecular targets, they showed similar reversal of their inhibitory activity in the presence of detergent. For three of the most potent aggregators, contributions to promiscuity via oxidative cycling were investigated; addition of 1 mM DTT had no effect on their activity, which is inconsistent with an oxidative mechanism. TCMs are often active at micromolar concentrations; this study suggests that care must be taken to control for artifactual activity when seeking their primary targets. Implications for the formulation of these molecules are considered.

Indexed as

Bacterial Proteinsbeta-Lactamase Inhibitorsbeta-LactamasesColloidsDose-Response Relationship, DrugDrugs, Chinese HerbalDynamic Light ScatteringEnzyme InhibitorsHIV ProteaseHIV Protease InhibitorsInhibitory Concentration 50Malate DehydrogenaseMedicine, Chinese TraditionalSmall Molecule LibrariesTrypsin InhibitorsAmpC beta-lactamasesBacterial Proteinsbeta-Lactamase Inhibitorsbeta-LactamasesColloidsDrugs, Chinese HerbalEnzyme InhibitorsHIV ProteaseHIV Protease InhibitorsMalate Dehydrogenasep16 protease, Human immunodeficiency virus 2Small Molecule LibrariesTrypsin Inhibitors

Identifiers

PMID25606714
PMCPMC4646422

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.