ArticleMeta gene2013
Complete Arabis alpina chloroplast genome sequence and insight into its polymorphism.
Article in Meta gene, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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Who cites it
9 citing papers in PubMed, 24 citations in OpenAlex.
- The chloroplast genome of Farsetia hamiltonii Royle, phylogenetic analysis, and comparative study with other members of Clade C of Brassicaceae.BMC plant biology · 2022Article
- The Complete Chloroplast Genome Sequence ofCurrent genomics · 2022Article
- Complete chloroplast genome features of the model heavy metal hyperaccumulatorPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Arabis alpina: A perennial model plant for ecological genomics and life-history evolution.Molecular ecology resources · 2022Review
- Comparative chloroplast genome analyses of 23 species inFrontiers in genetics · 2022Article
- Exploring the History of Chloroplast Capture in Arabis Using Whole Chloroplast Genome Sequencing.International journal of molecular sciences · 2018Article
- The extraordinary variation of the organellar genomes of the Aneura pinguis revealed advanced cryptic speciation of the early land plants.Scientific reports · 2017Article
- Characterization of the complete chloroplast genome of Arabis stellari and comparisons with related species.PloS one · 2017Article
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Authors and funding
2 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The alpine plant Arabis alpina (alpine rock-cress) is a thoroughly studied species in the fields of perennial plant flowering regulation, phylogeography, and adaptation to harsh alpine climatic conditions. We report the complete A. alpina chloroplast genome sequence obtained through de novo assembly of Illumina paired-end reads produced by total DNA sequencing. The A. alpina cp circular genome is 152,866 bp in length and built of two inverted repeats of 26,933 bp separated by unique regions: a large single copy of 82,338 bp and a small single copy of 17,938 bp. The genome contains 131 genes, some of them being duplicated in the inverted repeats. Seventy-nine unique protein-coding genes were annotated, together with 29 tRNA genes and 4 ribosomal RNA genes. Sequencing and mapping of 23 additional A. alpina DNA samples enabled to gain insight into the intraspecies polymorphism of the sequenced cp genome. Genetic variability among genomes was detected as 44 indels, most of them being located in noncoding regions, and 130 single-nucleotide polymorphisms, 37 of them corresponding to mutations in coding regions. A. alpina chloroplast genome sequence will be helpful in population studies or investigations of chloroplast functions of this alpine plant species.
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