Evidence map›Paper›PMID 25605962›Full record

ArticleRNA (New York, N.Y.)2015

Arginine methylation and citrullination of splicing factor proline- and glutamine-rich (SFPQ/PSF) regulates its association with mRNA.

Ambrosius P Snijders, Guillaume M Hautbergue, Alex Bloom, James C Williamson, Thomas C Minshull, Helen L Phillips, Simeon R Mihaylov, Douglas T Gjerde, David P Hornby, Stuart A Wilson and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Citrullination and the protein code: crosstalk between post-translational modifications in cancer.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  8. The virtues and vices of protein citrullination.Royal Society open science · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. A novel human lncRNA SANT1RNA biology · 2019
    Article
  20. Mining the Human Tissue Proteome for Protein Citrullination.Molecular & cellular proteomics : MCP · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Ambrosius P SnijdersChELSI Institute, Chemical and Biological Engineering, University of Sheffield, Sheffield S1 3JD, United Kingdom.
Guillaume M HautbergueSheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, Sheffield S10 2HQ, United Kingdom.
Alex BloomDepartment of Molecular Biology and Biotechnology, Krebs Institute, University of Sheffield, Sheffield S10 2TN, United Kingdom.
James C WilliamsonChELSI Institute, Chemical and Biological Engineering, University of Sheffield, Sheffield S1 3JD, United Kingdom.
Thomas C MinshullChELSI Institute, Chemical and Biological Engineering, University of Sheffield, Sheffield S1 3JD, United Kingdom.
Helen L PhillipsChELSI Institute, Chemical and Biological Engineering, University of Sheffield, Sheffield S1 3JD, United Kingdom.
Simeon R MihaylovSheffield Institute for Translational Neuroscience (SITraN), University of Sheffield, Sheffield S10 2HQ, United Kingdom.
Douglas T GjerdePhyNexus Inc., San Jose, California 95136, USA.
David P HornbyDepartment of Molecular Biology and Biotechnology, Krebs Institute, University of Sheffield, Sheffield S10 2TN, United Kingdom.
Stuart A WilsonDepartment of Molecular Biology and Biotechnology, Krebs Institute, University of Sheffield, Sheffield S10 2TN, United Kingdom.
Paul J HurdSchool of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom.
Mark J DickmanChELSI Institute, Chemical and Biological Engineering, University of Sheffield, Sheffield S1 3JD, United Kingdom m.dickman@sheffield.ac.uk.
University of Sheffield · GBFlex (United States) · USQueen Mary University of London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/D011795/1Wellcome Trust
6 · The paper itself

Abstract

Splicing factor proline- and glutamine-rich (SFPQ) also commonly known as polypyrimidine tract-binding protein-associated-splicing factor (PSF) and its binding partner non-POU domain-containing octamer-binding protein (NONO/p54nrb), are highly abundant, multifunctional nuclear proteins. However, the exact role of this complex is yet to be determined. Following purification of the endogeneous SFPQ/NONO complex, mass spectrometry analysis identified a wide range of interacting proteins, including those involved in RNA processing, RNA splicing, and transcriptional regulation, consistent with a multifunctional role for SFPQ/NONO. In addition, we have identified several sites of arginine methylation in SFPQ/PSF using mass spectrometry and found that several arginines in the N-terminal domain of SFPQ/PSF are asymmetrically dimethylated. Furthermore, we find that the protein arginine N-methyltransferase, PRMT1, catalyzes this methylation in vitro and that this is antagonized by citrullination of SFPQ. Arginine methylation and citrullination of SFPQ/PSF does not affect complex formation with NONO. However, arginine methylation was shown to increase the association with mRNA in mRNP complexes in mammalian cells. Finally we show that the biochemical properties of the endogenous complex from cell lysates are significantly influenced by the ionic strength during purification. At low ionic strength, the SFPQ/NONO complex forms large heterogeneous protein assemblies or aggregates, preventing the purification of the SFPQ/NONO complex. The ability of the SFPQ/NONO complex to form varying protein assemblies, in conjunction with the effect of post-translational modifications of SFPQ modulating mRNA binding, suggests key roles affecting mRNP dynamics within the cell.

Indexed as

Transcription, GeneticAnimalsArginineDNA-Binding ProteinsGene Expression RegulationHeLa CellsHumansMethylationMultiprotein ComplexesNuclear Matrix-Associated ProteinsOctamer Transcription FactorsProtein-Arginine N-MethyltransferasesProtein Processing, Post-TranslationalPTB-Associated Splicing FactorRepressor ProteinsRibonucleoproteinsArginineDNA-Binding Proteinsmessenger ribonucleoproteinMultiprotein ComplexesNONO protein, humanNuclear Matrix-Associated ProteinsOctamer Transcription FactorsPRMT1 protein, humanProtein-Arginine N-MethyltransferasesPTB-Associated Splicing FactorRepressor ProteinsRibonucleoproteinsRNA-Binding ProteinsRNA, Messengerarginine methylationcitrullinationmass spectrometrymRNP bindingnon-POU domain-containing octamer-binding proteinpolypyrimidine tract-binding protein-associated-splicing factorsplicing factor proline- and glutamine-rich

Identifiers

PMID25605962
PMCPMC4338332
OpenAlexW2142926068

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.