Evidence map›Paper›PMID 25605944›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Enhancer-bound LDB1 regulates a corticotrope promoter-pausing repression program.

Feng Zhang, Bogdan Tanasa, Daria Merkurjev, Chijen Lin, Xiaoyuan Song, Wenbo Li, Yuliang Tan, Zhijie Liu, Jie Zhang, Kenneth A Ohgi and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Novel Insights into Emx2 and Dmrta2 Cooperation during Cortex Development and Evidence for Dmrta2 Function in the Choroid Plexus.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  3. Review
  4. Article
  5. Article
  6. LDB1 establishes multi-enhancer networks to regulate gene expression.bioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 2 countries.

Feng ZhangHoward Hughes Medical Institute and Department of Medicine, School of Medicine, mrosenfeld@ucsd.edu fzhang@ucsd.edu.
Bogdan TanasaHoward Hughes Medical Institute and Department of Medicine, School of Medicine.
Daria MerkurjevHoward Hughes Medical Institute and Department of Medicine, School of Medicine, Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA 92093;
Chijen LinHoward Hughes Medical Institute and Department of Medicine, School of Medicine.
Xiaoyuan SongHoward Hughes Medical Institute and Department of Medicine, School of Medicine, Chinese Academy of Sciences Key Laboratory of Brain Function and Disease, and School of Life Sciences, University of Science and Technology of China, Hefei 230027, China.
Wenbo LiHoward Hughes Medical Institute and Department of Medicine, School of Medicine.
Yuliang TanHoward Hughes Medical Institute and Department of Medicine, School of Medicine.
Zhijie LiuHoward Hughes Medical Institute and Department of Medicine, School of Medicine.
Jie ZhangHoward Hughes Medical Institute and Department of Medicine, School of Medicine.
Kenneth A OhgiHoward Hughes Medical Institute and Department of Medicine, School of Medicine.
Anna KronesHoward Hughes Medical Institute and Department of Medicine, School of Medicine.
Dorota Skowronska-KrawczykHoward Hughes Medical Institute and Department of Medicine, School of Medicine.
Michael G RosenfeldHoward Hughes Medical Institute and Department of Medicine, School of Medicine, mrosenfeld@ucsd.edu fzhang@ucsd.edu.
Howard Hughes Medical Institute · US

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jing Yang · 1985 to 2026
$124.9M
Transcriptional Genomics CoreP01DK074868 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLASS, CHRISTOPHER K · 2007 to 2016
$16.6M
HORMONAL AND DEVELOPMENTAL REGULATION OF GENE EXPRESSIONR01DK018477 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ROSENFELD, MICHAEL G · 1986 to 2025
$12.7M
REGULATION OF NEUROENDOCRINE SWITCHING EVENTSR37DK039949 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ROSENFELD, MICHAEL G · 1987 to 2020
$12.3M
EXPANSION OF NURSA TRANSCRIPTOMINE ANNOTATIONU24DK097748 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI EVANS, RONALD M, MCKENNA, NEIL · 2012 to 2017
$9.2M
Ligand Regulated Epigenetic/Nuclear Architectural Strategies and Human DiseaseR01NS034934 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ROSENFELD, MICHAEL G · 1995 to 2013
$6.8M
Enhancer TherapyR01CA173903 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLASS, CHRISTOPHER K · 2012 to 2016
$6.3M
MOLECULAR MECHANISMS OF AORTIC AND PULMONARY DEFECTSR01HL065445 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ROSENFELD, MICHAEL G · 2000 to 2014
$5.3M
MOLECULAR BIOLOGICAL APPROACHES TO ENDOCRINOLOGYT32DK007541 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GAULTON, KYLE JEFFRIE, MAJITHIA, AMIT · 1987 to 2022
$4.5M
New Methods to Uncover Global Transcriptional Programs for Disease Risk VariantsR01GM104459 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI SUH, YOUSIN · 2013 to 2016
$2.5M
REGULATION OF NEUROENDOCRINE SWITCHING EVENTSR01DK039949 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ROSENFELD, MICHAEL G · 1996 to 2024
$2.4M
Howard Hughes Medical InstituteNCI NIH HHS CA173903NCI NIH HHS P30 CA023100NCI NIH HHS R01 CA173903NHLBI NIH HHS HL065445NHLBI NIH HHS R01 HL065445NIDDK NIH HHS 5U24DK097748NIDDK NIH HHS DK018477NIDDK NIH HHS DK039949NIDDK NIH HHS DK074868NIDDK NIH HHS P01 DK074868NIDDK NIH HHS R01 DK018477NIDDK NIH HHS R01 DK039949NIDDK NIH HHS R37 DK039949NIDDK NIH HHS T32 DK007541NIDDK NIH HHS U24 DK097748NIGMS NIH HHS GM104459NIGMS NIH HHS R01 GM104459NINDS NIH HHS NS034934NINDS NIH HHS R01 NS034934
6 · The paper itself

Abstract

Substantial evidence supports the hypothesis that enhancers are critical regulators of cell-type determination, orchestrating both positive and negative transcriptional programs; however, the basic mechanisms by which enhancers orchestrate interactions with cognate promoters during activation and repression events remain incompletely understood. Here we report the required actions of LIM domain-binding protein 1 (LDB1)/cofactor of LIM homeodomain protein 2/nuclear LIM interactor, interacting with the enhancer-binding protein achaete-scute complex homolog 1, to mediate looping to target gene promoters and target gene regulation in corticotrope cells. LDB1-mediated enhancer:promoter looping appears to be required for both activation and repression of these target genes. Although LDB1-dependent activated genes are regulated at the level of transcriptional initiation, the LDB1-dependent repressed transcription units appear to be regulated primarily at the level of promoter pausing, with LDB1 regulating recruitment of metastasis-associated 1 family, member 2, a component of the nucleosome remodeling deacetylase complex, on these negative enhancers, required for the repressive enhancer function. These results indicate that LDB1-dependent looping events can deliver repressive cargo to cognate promoters to mediate promoter pausing events in a pituitary cell type.

Indexed as

Enhancer Elements, GeneticPromoter Regions, GeneticAnimalsCell LineCorticotrophsDNA-Binding ProteinsLIM Domain ProteinsMiceMice, KnockoutDNA-Binding ProteinsLdb1 protein, mouseLIM Domain ProteinsASCL1enhancerLDB1loopingMTA2

Identifiers

PMID25605944
PMCPMC4321301
OpenAlexW2074684020

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.