Evidence map›Paper›PMID 25605908›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

The guanine nucleotide exchange factor Ric-8A induces domain separation and Ras domain plasticity in Gαi1.

Ned Van Eps, Celestine J Thomas, Wayne L Hubbell, Stephen R Sprang

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
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  4. Review
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  6. Article
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  11. GProceedings of the National Academy of Sciences of the United States of America · 2018
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  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ned Van EpsJules Stein Eye Institute and Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095; and.
Celestine J ThomasCenter for Biomolecular Structure and Dynamics and Division of Biological Sciences, University of Montana, Missoula, MT 59812.
Wayne L HubbellJules Stein Eye Institute and Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095; and hubbellw@jsei.ucla.edu stephen.sprang@umontana.edu.
Stephen R SprangCenter for Biomolecular Structure and Dynamics and Division of Biological Sciences, University of Montana, Missoula, MT 59812 hubbellw@jsei.ucla.edu stephen.sprang@umontana.edu.

Funding

Surveillance genome sequencing to detect SARS-CoV-2 virus variants in MontanaP20GM103546 · NIGMS · UNIVERSITY OF MONTANA · PI BOWLER, BRUCE E · 2012 to 2021
$19.2M
Vision Research Core at UCLAP30EY000331 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gregory Darin Field, DAVID S WILLIAMS · 1985 to 2026
$16.8M
MOLECULAR BASIS OF MEMBRANE EXCITATIONR01EY005216 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HUBBELL, WAYNE L · 1985 to 2019
$9.8M
Mechanism of G protein Activation by Ric-8A - competitive revision of R01GM105993R01GM105993 · NIGMS · UNIVERSITY OF MONTANA · PI SPRANG, STEPHEN R · 2013 to 2020
$2.8M
NEI NIH HHS P30 EY000331NEI NIH HHS P30EY00331NEI NIH HHS R01 EY005216NEI NIH HHS R01EY05216NIGMS NIH HHS P20 GM103546NIGMS NIH HHS P20GM103546NIGMS NIH HHS R01 GM105993NIGMS NIH HHS R01GM105993
6 · The paper itself

Abstract

Heterotrimeric G proteins are activated by exchange of GDP for GTP at the G protein alpha subunit (Gα), most notably by G protein-coupled transmembrane receptors. Ric-8A is a soluble cytoplasmic protein essential for embryonic development that acts as both a guanine nucleotide exchange factor (GEF) and a chaperone for Gα subunits of the i, q, and 12/13 classes. Previous studies demonstrated that Ric-8A stabilizes a dynamically disordered state of nucleotide-free Gα as the catalytic intermediate for nucleotide exchange, but no information was obtained on the structures involved or the magnitude of the structural fluctuations. In the present study, site-directed spin labeling (SDSL) together with double electron-electron resonance (DEER) spectroscopy is used to provide global distance constraints that identify discrete members of a conformational ensemble in the Gαi1:Ric-8A complex and the magnitude of structural differences between them. In the complex, the helical and Ras-like nucleotide-binding domains of Gαi1 pivot apart to occupy multiple resolved states with displacements as large as 25 Å. The domain displacement appears to be distinct from that observed in Gαs upon binding of Gs to the β2 adrenergic receptor. Moreover, the Ras-like domain exhibits structural plasticity within and around the nucleotide-binding cavity, and the switch I and switch II regions, which are known to adopt different conformations in the GDP- and GTP-bound states of Gα, undergo structural rearrangements. Collectively, the data show that Ric-8A induces a conformationally heterogeneous state of Gαi and provide insight into the mechanism of action of a nonreceptor Gα GEF.

Indexed as

AnimalsCattleElectron Spin Resonance SpectroscopyGTP-Binding Protein alpha SubunitsGuanine Nucleotide Exchange FactorsModels, Molecularras ProteinsGTP-Binding Protein alpha SubunitsGuanine Nucleotide Exchange Factorsras Proteinsdouble electron electron resonance spectroscopyG proteinguanine nucleotide exchange factorprotein dynamicstertiary structure

Identifiers

PMID25605908
PMCPMC4321267

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.