Evidence map›Paper›PMID 25605786›Full record

ArticleDevelopment (Cambridge, England)2015

CoinFLP: a system for efficient mosaic screening and for visualizing clonal boundaries in Drosophila.

Justin A Bosch, Ngoc Han Tran, Iswar K Hariharan

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 101 citations in OpenAlex.

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  14. Golgi clustering by the deficiency of COPI-SNARE inFrontiers in cell and developmental biology · 2024
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  15. Comprehensive study of SNAREs involved in the post-Golgi transport inFrontiers in cell and developmental biology · 2024
    Article
  16. TheFrontiers in cellular neuroscience · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Tctp, a unique Ing5-binding partner, inhibits the chromatin binding of Enok inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Justin A BoschDepartment of Molecular and Cell Biology, University of California, Berkeley 361 LSA, Berkeley, CA 94720-3200, USA.
Ngoc Han TranDepartment of Molecular and Cell Biology, University of California, Berkeley 361 LSA, Berkeley, CA 94720-3200, USA.
Iswar K HariharanDepartment of Molecular and Cell Biology, University of California, Berkeley 361 LSA, Berkeley, CA 94720-3200, USA ikh@berkeley.edu.
University of California, Berkeley · US

Funding

REGULATION OF CELL AND ORGAN SIZE IN VIVOR01GM061672 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARIHARAN, ISWAR K. · 2000 to 2017
$4.5M
A novel strategy for identifying genes that regulate eye developmentR21EY023924 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARIHARAN, ISWAR K. · 2013 to 2014
$409k
NEI NIH HHS R21 EY023924NEI NIH HHS R21EY23924NIGMS NIH HHS R01 GM061672NIGMS NIH HHS R01GM61672
6 · The paper itself

Abstract

Screens in mosaic Drosophila tissues that use chemical mutagenesis have identified many regulators of growth and patterning. Many of the mutant phenotypes observed were contingent upon the presence of both wild-type and mutant cells in the same tissue. More recently, large collections of RNAi lines or cDNAs expressed under Gal4/UAS control have been used to alter gene expression uniformly in specific tissues. However, these newer approaches are not easily combined with the efficient generation of genetic mosaics. The CoinFLP system described here enables mosaic screens in the context of gene knockdown or overexpression by automatically generating a reliable ratio of mutant to wild-type tissue in a developmentally controlled manner. CoinFLP-Gal4 generates mosaic tissues composed of clones of which only a subset expresses Gal4. CoinFLP-LexGAD/Gal4 generates tissues composed of clones that express either Gal4 or LexGAD, thus allowing the study of interactions between different types of genetically manipulated cells. By combining CoinFLP-LexGAD/Gal4 with the split-GFP system GRASP, boundaries between genetically distinct cell populations can be visualized at high resolution.

Indexed as

MosaicismAnimalsCrosses, GeneticDrosophilaDrosophila ProteinsEyeGene Expression Regulation, DevelopmentalGene Knockdown TechniquesGene Knock-In TechniquesHigh-Throughput Screening AssaysImage Processing, Computer-AssistedImaginal DiscsImmunohistochemistryMicroscopy, ConfocalTranscription FactorsWings, AnimalDrosophila ProteinsGAL4 protein, DrosophilaTranscription FactorsBoundaryDrosophilaMosaic screenOverexpressionRNAi

Identifiers

PMID25605786
PMCPMC4302991
OpenAlexW2113563206

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.