Evidence map›Paper›PMID 25605538›Full record

ArticleExtremophiles : life under extreme conditions2015

UDP-sulfoquinovose formation by Sulfolobus acidocaldarius.

Behnam Zolghadr, Bernhard Gasselhuber, Markus Windwarder, Martin Pabst, Daniel Kracher, Martina Kerndl, Sonja Zayni, Andreas Hofinger-Horvath, Roland Ludwig, Dietmar Haltrich and 5 more

Abstract read
In one paragraph

Article in Extremophiles : life under extreme conditions, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Advances in microbial sulfoquinovose catabolism.Frontiers in microbiology · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Entner-Doudoroff pathway for sulfoquinovose degradation in Pseudomonas putida SQ1.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Behnam ZolghadrDepartment of NanoBiotechnology, NanoGlycobiology Unit, Universität für Bodenkultur Wien, Muthgasse 11, 1190, Vienna, Austria.
Bernhard Gasselhuber
Markus Windwarder
Martin Pabst
Daniel Kracher
Martina Kerndl
Sonja Zayni
Andreas Hofinger-Horvath
Roland Ludwig
Dietmar Haltrich
Chris Oostenbrink
Christian Obinger
Paul Kosma
Paul Messner
Christina Schäffer

Funding

Austrian Science Fund FWF P 21954Austrian Science Fund FWF P 22791Austrian Science Fund FWF P 24305Austrian Science Fund FWF P 24317Austrian Science Fund FWF W 1224
6 · The paper itself

Abstract

The UDP-sulfoquinovose synthase Agl3 from Sulfolobus acidocaldarius converts UDP-D-glucose and sulfite to UDP-sulfoquinovose, the activated form of sulfoquinovose required for its incorporation into glycoconjugates. Based on the amino acid sequence, Agl3 belongs to the short-chain dehydrogenase/reductase enzyme superfamily, together with SQD1 from Arabidopsis thaliana, the only UDP-sulfoquinovose synthase with known crystal structure. By comparison of sequence and structure of Agl3 and SQD1, putative catalytic amino acids of Agl3 were selected for mutational analysis. The obtained data suggest for Agl3 a modified dehydratase reaction mechanism. We propose that in vitro biosynthesis of UDP-sulfoquinovose occurs through an NAD(+)-dependent oxidation/dehydration/enolization/sulfite addition process. In the absence of a sulfur donor, UDP-D-glucose is converted via UDP-4-keto-D-glucose to UDP-D-glucose-5,6-ene, the structure of which was determined by (1)H and (13)C-NMR spectroscopy. During the redox reaction the cofactor remains tightly bound to Agl3 and participates in the reaction in a concentration-dependent manner. For the first time, the rapid initial electron transfer between UDP-D-glucose and NAD(+) could be monitored in a UDP-sulfoquinovose synthase. Deuterium labeling confirmed that dehydration of UDP-D-glucose occurs only from the enol form of UDP-4-keto-glucose. The obtained functional data are compared with those from other UDP-sulfoquinovose synthases. A divergent evolution of Agl3 from S. acidocaldarius is suggested.

Indexed as

Amino Acid SequenceArchaeal ProteinsGlucosyltransferasesMolecular Sequence DataNADSulfolobusUridine Diphosphate GlucoseArchaeal ProteinsGlucosyltransferasesNADUridine Diphosphate Glucoseuridine diphosphate sulfoquinovose

Identifiers

PMID25605538
PMCPMC4388408

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.