Evidence map›Paper›PMID 25605310›Full record

ArticleJournal of bacteriology2015

Evidence that TP_0144 of Treponema pallidum is a thiamine-binding protein.

Jiang Bian, Youbin Tu, Song-Mei Wang, Xuan-Yi Wang, Chunhao Li

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Jiang BianDepartment of Oral Biology, State University of New York at Buffalo, Buffalo, New York, USA.
Youbin TuDepartment of Bioinformatics, School of Basic Medicine and Biological Sciences, Soochow University, Suzhou, People's Republic of China.
Song-Mei WangLaboratory of Molecular Biology, Training Center of Medical Experiments, School of Basic Medical Sciences, Fudan University, Shanghai, People's Republic of China.
Xuan-Yi WangKey Laboratory of Medical Molecular Virology of MOE/MOH and Institutes of Biomedical Sciences, Shanghai Medical College, Fudan University, Shanghai, People's Republic of China.
Chunhao LiDepartment of Oral Biology, State University of New York at Buffalo, Buffalo, New York, USA Department of Microbiology and Immunology, State University of New York at Buffalo, Buffalo, New York, USA cli9@buffalo.edu.
University at Buffalo, State University of New York · USFudan University · CNShanghai Medical College of Fudan University · CNSoochow University · CN

Funding

Exploring New Virulence Factors of the Oral Spirochete Treponema denticolaR01DE023080 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI Chunhao Chris Li · 2013 to 2026
$5.2M
Developing Inhibitors of LuxS-dependent Quorum Sensing Systems in Oral BacteriaR01DE019667 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI LI, CHUNHAO CHRIS · 2010 to 2013
$1.4M
Role of Zonula Occludens Toxin in the Pathogenesis of Treponema denticolaR21DE018829 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI LI, CHUNHAO CHRIS · 2008 to 2009
$427k
NIDCR NIH HHS R01 DE019667NIDCR NIH HHS R01 DE023080NIDCR NIH HHS R21 DE018829
6 · The paper itself

Abstract

Thiamine pyrophosphate (TPP), the biologically active form of thiamine (also known as vitamin B1), is an essential cofactor for several important enzymes involved in carbohydrate metabolism, and therefore, it is required for all living organisms. We recently found that a thiamine-binding protein (TDE_0143) is essential for the survival of Treponema denticola, an important bacterial pathogen that is associated with human periodontitis. In this report, we provide experimental evidence showing that TP_0144, a homolog of TDE_0143 from the syphilis spirochete Treponema pallidum, is a thiamine-binding protein that has biochemical features and functions that are similar to those of TDE_0143. First, structural modeling analysis reveal that both TDE_0143 and TP_0144 contain a conserved TPP-binding site and share similar structures to the thiamine-binding protein of Escherichia coli. Second, biochemical analysis shows that these two proteins bind to TPP with similar dissociation constant (Kd) values (TDE_0143, Kd of 36.50 nM; TP_0144, Kd of 32.62 nM). Finally, heterologous expression of TP_0144 in a ΔTDE_0143 strain, a previously constructed TDE_0143 mutant of T. denticola, fully restores its growth and TPP uptake when exogenous thiamine is limited. Collectively, these results indicate that TP_0144 is a thiamine-binding protein that is indispensable for T. pallidum to acquire exogenous thiamine, a key nutrient for bacterial survival. In addition, the studies shown in this report further underscore the feasibility of using T. denticola as a platform to study the biology and pathogenicity of T. pallidum and probably other uncultivable treponemal species as well.

Indexed as

Bacterial ProteinsCarrier ProteinsGene Expression Regulation, BacterialThiamineTreponema pallidumBacterial ProteinsCarrier ProteinsThiaminethiamine-binding protein

Identifiers

PMID25605310
PMCPMC4352656
OpenAlexW2067029154

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.