ArticleJournal of applied genetics2015
First insights into the microbial diversity in the omasum and reticulum of bovine using Illumina sequencing.
Article in Journal of applied genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 50 citations in OpenAlex.
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- Fecal Microbiota Profiling in Indigenous Backyard and Commercial Chickens Reveals Distinct Taxonomic Signatures.Veterinary medicine international · 2026Article
- The dynamics of single stranded, positive sense RNA bacteriophages in the rumen virome.Scientific reports · 2025Article
- Integrated multi-omics reveals the impact of ruminal keystone bacteria and microbial metabolites on average daily gain in Xuzhou cattle.Microbiology spectrum · 2025Article
- Impact of virginiamycin on the ruminal microbiota of feedlot cattle.Canadian journal of veterinary research = Revue canadienne de recherche veterinaire · 2024Article
- Impact of Seasonal Variation in Pasture on Rumen Microbial Community and Volatile Fatty Acids in Grazing Yaks: Insights from High-Altitude Environments.Microorganisms · 2024Article
- Multi-omics data elucidate parasite-host-microbiota interactions and resistance to Haemonchus contortus in sheep.Parasites & vectors · 2024Article
- Review: Effect of Experimental Diets on the Microbiome of Productive Animals.Microorganisms · 2023Review
- The Microbiota and Cytokines Correlation between the Jejunum and Colon in Altay Sheep.Animals : an open access journal from MDPI · 2022Article
- Comparison of Microbial Community and Metabolites in Four Stomach Compartments of Myostatin-Gene-Edited and Non-edited Cattle.Frontiers in microbiology · 2022Article
- Bacterial Community Characteristics in the Gastrointestinal Tract of Yak (Animals : an open access journal from MDPI · 2021Article
- Effects of transport stress on pathological injury and expression of main heat shock proteins in the caprine stomach.BMC veterinary research · 2020Article
- Characterization of Rumen Microbiota of Two Sheep Breeds Supplemented With Direct-Fed Lactic Acid Bacteria.Frontiers in veterinary science · 2020Article
- A Mixed Phytogenic Modulates the Rumen Bacteria Composition and Milk Fatty Acid Profile of Water Buffaloes.Frontiers in veterinary science · 2020Article
- The Composition of Fungal Communities in the Rumen of Gayals (Polish journal of microbiology · 2019Article
- Article
- Microbial diversity in the rumen, reticulum, omasum, and abomasum of yak on a rapid fattening regime in an agro-pastoral transition zone.Journal of microbiology (Seoul, Korea) · 2018Article
- Exploring the Spatial-Temporal Microbiota of Compound Stomachs in a Pre-weaned Goat Model.Frontiers in microbiology · 2018Article
- Microbial community compositions in the gastrointestinal tract of Chinese Mongolian sheep using Illumina MiSeq sequencing revealed high microbial diversity.AMB Express · 2017Article
- Diversity and functions of the sheep faecal microbiota: a multi-omic characterization.Microbial biotechnology · 2017Article
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The digestive systems of mammals harbor a complex gut microbiome, comprising bacteria and other microorganisms that confer metabolic and immunological benefits to the host. Ruminants that digest plant-based foods have a four-compartment stomach consisting of the rumen, reticulum, omasum, and abomasum. The microorganisms in the stomach are essential for providing the host with critical nutrients. However, the majority of these microorganisms are unknown species. The microbiome of the stomach is diverse, and the majority of these organisms cannot be cultured. Next-generation sequencing (NGS) combined with bioinformatic analysis tools have allowed the dissection of the composition of the microbiome in samples collected from a specific environment. In this study, for the first time, the bacterial composition in two compartments, the reticulum and the omasum, of bovine were analyzed using a metagenomic approach and compared to the bacterial composition of the rumen. These data will assist in understanding the biology of ruminants and benefit the agricultural industry. The diversity and composition of the bacterial community in samples collected from the rumen, reticulum, and omasum of bovines in the Changchun Region of Northeast China were analyzed by sequencing the V3 region of the 16S rRNA gene using a barcoded Illumina paired-end sequencing technique, and the primary composition of the microbiome in the rumen, reticulum, and omasum of the bovines was determined. These microbiomes contained 17 phyla and 107 genera in all three samples. Five phyla, Bacteroidetes, Firmicutes, Proteobacteria, Spirochaetes, and Lentisphaerae, were the most abundant taxonomic groups. Additionally, the different stomach compartments harbored different compositions of the microorganisms.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.