Evidence map›Paper›PMID 25603799›Full record

ArticleBMC biology2015

A role for Ras in inhibiting circular foraging behavior as revealed by a new method for time and cell-specific RNAi.

Masayuki Hamakawa, Takayuki Uozumi, Naoko Ueda, Yuichi Iino, Takaaki Hirotsu

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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  7. Neuropeptidergic Signaling and Active Feeding State Inhibit Nociception in Caenorhabditis elegans.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Masayuki HamakawaGraduate School of Systems Life Sciences, Kyushu University, Fukuoka, 812-8581, Japan. beachriver14@gmail.com.
Takayuki UozumiGraduate School of Systems Life Sciences, Kyushu University, Fukuoka, 812-8581, Japan. 3sl10046r@sls.kyushu-u.ac.jp.
Naoko UedaDepartment of Biology, Faculty of Sciences, Kyushu University, Fukuoka, 812-8581, Japan. n.ueda.0703@gmail.com.
Yuichi IinoDepartment of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo, Tokyo, 113-0033, Japan. iino@bs.s.u-tokyo.ac.jp.
Takaaki HirotsuGraduate School of Systems Life Sciences, Kyushu University, Fukuoka, 812-8581, Japan. hirotsu.takaaki.056@m.kyushu-u.ac.jp.
Kyushu University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe nematode worm Caenorhabditis elegans, in which loss-of-function mutants and RNA interference (RNAi) models are available, is a model organism useful for analyzing effects of genes on various life phenomena, including behavior. In particular, RNAi is a powerful tool that enables time- or cell-specific knockdown via heat shock-inducible RNAi or cell-specific RNAi. However, conventional RNAi is insufficient for investigating pleiotropic genes with various sites of action and life stage-dependent functions.

resultsHere, we investigated the Ras gene for its role in exploratory behavior in C. elegans. We found that, under poor environmental conditions, mutations in the Ras-MAPK signaling pathway lead to circular locomotion instead of normal exploratory foraging. Spontaneous foraging is regulated by a neural circuit composed of three classes of neurons: IL1, OLQ, and RMD, and we found that Ras functions in this neural circuit to modulate the direction of locomotion. We further observed that Ras plays an essential role in the regulation of GLR-1 glutamate receptor localization in RMD neurons. To investigate the temporal- and cell-specific profiles of the functions of Ras, we developed a new RNAi method that enables simultaneous time- and cell-specific knockdown. In this method, one RNA strand is expressed by a cell-specific promoter and the other by a heat shock promoter, resulting in only expression of double-stranded RNA in the target cell when heat shock is induced. This technique revealed that control of GLR-1 localization in RMD neurons requires Ras at the adult stage. Further, we demonstrated the application of this method to other genes.

conclusionsWe have established a new RNAi method that performs simultaneous time- and cell-specific knockdown and have applied this to reveal temporal profiles of the Ras-MAPK pathway in the control of exploratory behavior under poor environmental conditions.

Indexed as

Feeding BehaviorRNA InterferenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsGene Expression ProfilingLocomotionMitogen-Activated Protein KinasesMutationNerve NetNeuronsras ProteinsReceptors, GlutamateReproducibility of ResultsTime FactorsCaenorhabditis elegans ProteinsMitogen-Activated Protein Kinasesras ProteinsReceptors, Glutamate

Identifiers

PMID25603799
PMCPMC4321700
OpenAlexW2042595301

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.