Evidence map›Paper›PMID 25602368›Full record

ArticleACS chemical biology2015

Selective inhibitor of platelet-activating factor acetylhydrolases 1b2 and 1b3 that impairs cancer cell survival.

Jae Won Chang, Andrea M Zuhl, Anna E Speers, Sherry Niessen, Steven J Brown, Melinda M Mulvihill, Yi Chiao Fan, Timothy P Spicer, Mark Southern, Louis Scampavia and 9 more

Open access · greenAbstract readLetter
In one paragraph

Article in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 52 citations in OpenAlex.

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  17. In vivo RNAi screening identifiesBlood advances · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 2 institutions in 1 country.

Jae Won Chang
Andrea M Zuhl
Anna E Speers
Sherry Niessen
Steven J Brown
Melinda M Mulvihill⊥Department of Nutritional Sciences and Toxicology, University of California, Berkeley, 127 Morgan Hall, Berkeley, California 94720, United States.
Yi Chiao Fan#Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States.
Timothy P Spicer
Mark Southern
Louis Scampavia
Virneliz Fernandez-Vega
Melissa M Dix
Michael D Cameron
Peter S Hodder
Hugh Rosen
Daniel K Nomura⊥Department of Nutritional Sciences and Toxicology, University of California, Berkeley, 127 Morgan Hall, Berkeley, California 94720, United States.
Ohyun Kwon#Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095-1569, United States.
Ku-Lung Hsu
Benjamin F Cravatt
University of California, Berkeley · USUniversity of California, Los Angeles · US

Funding

UHTS Implementation(Florida)U54MH084512 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI DING, SHENG · 2008 to 2013
$89.2M
Phosphine-Catalyzed Annulations and Their ApplicationsR01GM071779 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI OHYUN KWON · 2006 to 2026
$5.7M
CHEMOPROTEOMIC METHODS FOR SERINE HYDROLASE INHIBITOR DEVELOPMENTR01DA033760 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI CRAVATT, BENJAMIN F, SCAMPAVIA, LOUIS DANIEL · 2012 to 2021
$5.1M
Chemical Approaches for Activity-Based ProteomicsR37CA087660 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI CRAVATT, BENJAMIN F · 2009 to 2018
$3.1M
Annotating the Role of Dysregulated Inositol Phosphate Metabolism in Malignant CaR01CA172667 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI NOMURA, DANIEL · 2013 to 2017
$1.7M
Pilot-Scale Library Production Based on Phosphine Catalysis of AllenesP41GM081282 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KWON, OHYUN · 2007 to 2009
$1.4M
Functional Characterization of Diacylglycerol Lipases in Mammalian PhysiologyR00DA035864 · NIDA · UNIVERSITY OF VIRGINIA · PI HSU, KU-LUNG · 2015 to 2017
$744k
Functional Characterization of Diacylglycerol Lipases in Mammalian PhysiologyK99DA035864 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI HSU, KU-LUNG · 2014 to 2014
$128k
NCI NIH HHS R01 CA172667NCI NIH HHS R37 CA087660NIDA NIH HHS DA033760NIDA NIH HHS DA035864NIDA NIH HHS K99 DA035864NIDA NIH HHS R00 DA035864NIDA NIH HHS R01 DA033760NIGMS NIH HHS GM071779NIGMS NIH HHS GM081282NIGMS NIH HHS P41 GM081282NIGMS NIH HHS R01 GM071779NIMH NIH HHS MH084512NIMH NIH HHS U54 MH084512
6 · The paper itself

Abstract

Platelet-activating factor acetylhydrolases (PAFAHs) 1b2 and 1b3 are poorly characterized serine hydrolases that form a complex with a noncatalytic protein (1b1) to regulate brain development, spermatogenesis, and cancer pathogenesis. Determining physiological substrates and biochemical functions for the PAFAH1b complex would benefit from selective chemical probes that can perturb its activity in living systems. Here, we report a class of tetrahydropyridine reversible inhibitors of PAFAH1b2/3 discovered using a fluorescence polarization-activity-based protein profiling (fluopol-ABPP) screen of the NIH 300,000+ compound library. The most potent of these agents, P11, exhibited IC50 values of ∼40 and 900 nM for PAFAH1b2 and 1b3, respectively. We confirm selective inhibition of PAFAH1b2/3 in cancer cells by P11 using an ABPP protocol adapted for in situ analysis of reversible inhibitors and show that this compound impairs tumor cell survival, supporting a role for PAFAH1b2/3 in cancer.

Indexed as

1-Alkyl-2-acetylglycerophosphocholine EsteraseAnimalsBrainCell LineCell Line, TumorCell SurvivalDrug Evaluation, PreclinicalFluorescence PolarizationHumansInhibitory Concentration 50Lung NeoplasmsMiceProteomicsPyridinesSmall Molecule LibrariesStructure-Activity Relationship1-Alkyl-2-acetylglycerophosphocholine EsterasePAFAH1b2 protein, mousePAFAH1b3 protein, mousePyridinesSmall Molecule Libraries

Identifiers

PMID25602368
PMCPMC4402257
OpenAlexW2333505524

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.