Evidence map›Paper›PMID 25600173›Full record

ArticleScientific reports2015

Mapping sites of aspirin-induced acetylations in live cells by quantitative acid-cleavable activity-based protein profiling (QA-ABPP).

Jigang Wang, Chong-Jing Zhang, Jianbin Zhang, Yingke He, Yew Mun Lee, Songbi Chen, Teck Kwang Lim, Shukie Ng, Han-Ming Shen, Qingsong Lin

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 89 citations in OpenAlex.

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  5. Degradation-Based Protein Profiling: A Case Study of Celastrol.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
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  9. Recent Trends in anti-tumor mechanisms and molecular targets of celastrol.International journal of biological sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jigang WangDepartment of Biological Sciences, 14 Science Drive 4, National University of Singapore, Singapore, 117543.
Chong-Jing ZhangTropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Baodao Xincun, Danzhou, Hainan, P.R. China, 571737.
Jianbin ZhangDepartment of Physiology, Yong Loo Lin School of Medicine, Block MD9, 2 Medical Drive, National University of Singapore, Singapore 117597.
Yingke HeDepartment of Anaesthesiology, Singapore General Hospital, Outram Road, Singapore, 169608.
Yew Mun LeeDepartment of Biological Sciences, 14 Science Drive 4, National University of Singapore, Singapore, 117543.
Songbi ChenTropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Science, Baodao Xincun, Danzhou, Hainan, P.R. China, 571737.
Teck Kwang LimDepartment of Biological Sciences, 14 Science Drive 4, National University of Singapore, Singapore, 117543.
Shukie NgDepartment of Physiology, Yong Loo Lin School of Medicine, Block MD9, 2 Medical Drive, National University of Singapore, Singapore 117597.
Han-Ming ShenDepartment of Physiology, Yong Loo Lin School of Medicine, Block MD9, 2 Medical Drive, National University of Singapore, Singapore 117597.
Qingsong LinDepartment of Biological Sciences, 14 Science Drive 4, National University of Singapore, Singapore, 117543.
National University of Singapore · SGSingapore General Hospital · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Target-identification and understanding of mechanism-of-action (MOA) are challenging for development of small-molecule probes and their application in biology and drug discovery. For example, although aspirin has been widely used for more than 100 years, its molecular targets have not been fully characterized. To cope with this challenge, we developed a novel technique called quantitative acid-cleavable activity-based protein profiling (QA-ABPP) with combination of the following two parts: (i) activity-based protein profiling (ABPP) and iTRAQ™ quantitative proteomics for identification of target proteins and (ii) acid-cleavable linker-based ABPP for identification of peptides with specific binding sites. It is known that reaction of aspirin with its target proteins leads to acetylation. We thus applied the above technique using aspirin-based probes in human cancer HCT116 cells. We identified 1110 target proteins and 2775 peptides with exact acetylation sites. By correlating these two sets of data, 523 proteins were identified as targets of aspirin. We used various biological assays to validate the effects of aspirin on inhibition of protein synthesis and induction of autophagy which were elicited from the pathway analysis of Aspirin target profile. This technique is widely applicable for target identification in the field of drug discovery and biology, especially for the covalent drugs.

Indexed as

ProteomicsAcetylationAspirinBinding SitesDrug DiscoveryHumansPeptidesProtein Array AnalysisAspirinPeptides

Identifiers

PMID25600173
PMCPMC5379034
OpenAlexW1987349039

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.