Evidence map›Paper›PMID 25600116›Full record

ArticleEMBO reports2015

Glycolytic enzymes localize to ribonucleoprotein granules in Drosophila germ cells, bind Tudor and protect from transposable elements.

Ming Gao, Travis C Thomson, T Michael Creed, Shikui Tu, Sudan N Loganathan, Christina A Jackson, Patrick McCluskey, Yanyan Lin, Scott E Collier, Zhiping Weng and 3 more

Open access · greenAbstract read
In one paragraph

Article in EMBO reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. PIWI proteins and piRNAs: key regulators of stem cell biology.Frontiers in cell and developmental biology · 2025
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  6. Looking at the Pretty "Phase" of Membraneless Organelles: A View FromFrontiers in cell and developmental biology · 2022
    Review
  7. Article
  8. Article
  9. Article
  10. FEBS open bio · 2016
    Article
  11. Review
  12. Germ Plasm Biogenesis--An Oskar-Centric Perspective.Current topics in developmental biology · 2016
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Ming GaoDepartment of Biological Sciences, Murray State University, Murray, KY, USA.
Travis C ThomsonProgram in Molecular Medicine, University of Massachusetts Medical School, Worcester, MA, USA.
T Michael CreedDepartment of Biological Sciences, Murray State University, Murray, KY, USA.
Shikui TuProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Sudan N LoganathanDepartment of Biological Sciences, Murray State University, Murray, KY, USA.
Christina A JacksonDepartment of Biological Sciences, Murray State University, Murray, KY, USA.
Patrick McCluskeyDepartment of Biological Sciences, Murray State University, Murray, KY, USA.
Yanyan LinDepartment of Biological Sciences, Murray State University, Murray, KY, USA.
Scott E CollierDepartment of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, USA.
Zhiping WengProgram in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Paul LaskoDepartment of Biology, McGill University, Montreal, QC, Canada.
Melanie D OhiDepartment of Cell and Developmental Biology, Vanderbilt University School of Medicine, Nashville, TN, USA.
Alexey L ArkovDepartment of Biological Sciences, Murray State University, Murray, KY, USA aarkov@murraystate.edu.
Murray State University · USUniversity of Massachusetts Chan Medical School · USVanderbilt University · USMcGill University · CA

Funding

WKU Lead Faculty AwardP20GM103436 · NIGMS · UNIVERSITY OF LOUISVILLE · PI ERIC C ROUCHKA · 2012 to 2026
$60.1M
EDAC: ENCODE Data Analysis CenterU41HG007000 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WENG, ZHIPING · 2012 to 2016
$9.8M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
Multifaceted Approaches for Studying the Structure and Function of SpliceosomesDP2OD004483 · OD · VANDERBILT UNIVERSITY · PI OHI, MELANIE DIANE · 2008 to 2008
$2.3M
Genetic and Biochemical Analyses of Germline Development in DrosophilaR15GM087661 · NIGMS · MURRAY STATE UNIVERSITY · PI ARKOV, ALEXEY · 2009 to 2009
$179k
NHGRI NIH HHS U41 HG007000NHGRI NIH HHS U41HG007000NIGMS NIH HHS 8P20GM103436‐14NIGMS NIH HHS P20 GM103436NIGMS NIH HHS R15 GM087661NIGMS NIH HHS R15GM087661NIGMS NIH HHS T32 GM008320NIGMS NIH HHS T32 GM08320NIH HHS DP2 OD004483NIH HHS DP2OD004483
6 · The paper itself

Abstract

Germ cells give rise to all cell lineages in the next-generation and are responsible for the continuity of life. In a variety of organisms, germ cells and stem cells contain large ribonucleoprotein granules. Although these particles were discovered more than 100 years ago, their assembly and functions are not well understood. Here we report that glycolytic enzymes are components of these granules in Drosophila germ cells and both their mRNAs and the enzymes themselves are enriched in germ cells. We show that these enzymes are specifically required for germ cell development and that they protect their genomes from transposable elements, providing the first link between metabolism and transposon silencing. We further demonstrate that in the granules, glycolytic enzymes associate with the evolutionarily conserved Tudor protein. Our biochemical and single-particle EM structural analyses of purified Tudor show a flexible molecule and suggest a mechanism for the recruitment of glycolytic enzymes to the granules. Our data indicate that germ cells, similarly to stem cells and tumor cells, might prefer to produce energy through the glycolytic pathway, thus linking a particular metabolism to pluripotency.

Indexed as

AnimalsAnimals, Genetically ModifiedBase SequenceCytoplasmic GranulesDNA Transposable ElementsDrosophilaDrosophila ProteinsGerm CellsGlycolysisMembrane Transport ProteinsMicroRNAsMolecular Sequence DataRibonucleoproteinsSequence Analysis, DNADNA Transposable ElementsDrosophila ProteinsMembrane Transport ProteinsMicroRNAsRibonucleoproteinstud protein, Drosophilagerm cellsglycolysisstem cellstransposable elementsTudor domain

Identifiers

PMID25600116
PMCPMC4364877
OpenAlexW2080297618

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.