Evidence map›Paper›PMID 25599974›Full record

ArticleGenetic epidemiology2015

A genome-wide association study of early spontaneous preterm delivery.

Heping Zhang, Don A Baldwin, Radek K Bukowski, Samuel Parry, Yaji Xu, Chi Song, William W Andrews, George R Saade, M Sean Esplin, Yoel Sadovsky and 5 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Genetic epidemiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 2 pooled it
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 2 syntheses or guidelines pooled it, 64 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. The Role of Genetics in Preterm Birth.Reproductive sciences (Thousand Oaks, Calif.) · 2023
    Review
  13. Article
  14. Pros and cons of Mendelian randomization.Fertility and sterility · 2023
    Review
  15. Review
  16. Genetics, epigenetics, and transcriptomics of preterm birth.American journal of reproductive immunology (New York, N.Y. : 1989) · 2022
    Review
  17. Systematic review of preterm birth multi-omic biomarker studies.Expert reviews in molecular medicine · 2022
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 1 country.

Heping ZhangDepartment of Biostatistics, Yale University School of Public Health, New Haven, Connecticut, United States of America.
Don A Baldwin
Radek K Bukowski
Samuel Parry
Yaji Xu
Chi Song
William W Andrews
George R Saade
M Sean Esplin
Yoel Sadovsky
Uma M Reddy
John Ilekis
Michael Varner
Joseph R Biggio
Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) Genomic and Proteomic Network for Preterm Birth Research (GPN-PBR)
Eunice Kennedy Shriver National Institute of Child Health and Human Development · USThe University of Texas Medical Branch at Galveston · USUniversity of Alabama at Birmingham · USUniversity of Pennsylvania · USYale University · USIntermountain Healthcare · USMagee-Womens Research Institute · USUniversity of Utah · USYale New Haven Health System · US

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
UAB Center for Clinical and Translational Science (CCTS)UL1TR001417 · NCATS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2015 to 2018
$31.4M
UAB CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCE (CCTS) UL1: BPCAUL1RR025777 · NCRR · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GUAY-WOODFORD, LISA MARIE · 2008 to 2011
$22.3M
Research Services CoreP2CHD050924 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAREN B GUZZO · 2015 to 2026
$9.6M
Data Management, Statistics, and informatics CoreU01HD050062 · NICHD · YALE UNIVERSITY · PI ZHANG, HEPING · 2005 to 2010
$5.1M
Network for Premature Birth Research Analytical CoreU01HD050088 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI PARRY, SAMUEL I. · 2006 to 2013
$4.1M
Statistical Methods in Genetic Studies of Substance UseR01DA016750 · NIDA · YALE UNIVERSITY · PI ZHANG, HEPING · 2004 to 2016
$3.3M
Genomic and Proteomic Network-Premature Birth ResearchU01HD050080 · NICHD · UNIVERSITY OF UTAH · PI VARNER, MICHAEL W. · 2006 to 2010
$2.3M
Genomic/Proteomic PTB Network: UAB Clinical Core CenterU01HD050094 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BIGGIO, JOSEPH RAMON · 2006 to 2010
$1.7M
Genomic/Proteomic Premature Birth Research Clinical CoreU01HD050078 · NICHD · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BUKOWSKI, RADEK K. · 2006 to 2010
$1.6M
NCATS NIH HHS UL1 TR001417NCRR NIH HHS UL1 RR025777NCRR NIH HHS UL1 RR25777NICHD NIH HHS P2C HD050924NICHD NIH HHS U01 HD050062NICHD NIH HHS U01-HD-050062NICHD NIH HHS U01 HD050078NICHD NIH HHS U01-HD-050078NICHD NIH HHS U01 HD050080NICHD NIH HHS U01-HD-050080NICHD NIH HHS U01 HD050088NICHD NIH HHS U01-HD-050088NICHD NIH HHS U01 HD050094NICHD NIH HHS U01-HD-050094NICHD NIH HHS U01 HD50062NICHD NIH HHS U01 HD50078NICHD NIH HHS U01 HD50080NICHD NIH HHS U01 HD50094NICHD NIH HHS U01 HD5088NIDA NIH HHS R01 DA016750NIEHS NIH HHS P30 ES013508
6 · The paper itself

Abstract

Preterm birth is the leading cause of infant morbidity and mortality. Despite extensive research, the genetic contributions to spontaneous preterm birth (SPTB) are not well understood. Term controls were matched with cases by race/ethnicity, maternal age, and parity prior to recruitment. Genotyping was performed using Affymetrix SNP Array 6.0 assays. Statistical analyses utilized PLINK to compare allele occurrence rates between case and control groups, and incorporated quality control and multiple-testing adjustments. We analyzed DNA samples from mother-infant pairs from early SPTB cases (20(0/7)-33(6/7) weeks, 959 women and 979 neonates) and term delivery controls (39(0/7)-41(6/7) weeks, 960 women and 985 neonates). For validation purposes, we included an independent validation cohort consisting of early SPTB cases (293 mothers and 243 infants) and term controls (200 mothers and 149 infants). Clustering analysis revealed no population stratification. Multiple maternal SNPs were identified with association P-values between 10×10(-5) and 10×10(-6). The most significant maternal SNP was rs17053026 on chromosome 3 with an odds ratio (OR) 0.44 with a P-value of 1.0×10(-6). Two neonatal SNPs reached the genome-wide significance threshold, including rs17527054 on chromosome 6p22 with a P-value of 2.7×10(-12) and rs3777722 on chromosome 6q27 with a P-value of 1.4×10(-10). However, we could not replicate these findings after adjusting for multiple comparisons in a validation cohort. This is the first report of a genome-wide case-control study to identify single nucleotide polymorphisms (SNPs) that correlate with SPTB.

Indexed as

Genome-Wide Association StudyAdultBiomarkersCase-Control StudiesFemaleGenotypeHumansInfant, NewbornMaternal AgeParityPolymorphism, Single NucleotidePregnancyPremature BirthValidation Studies as TopicYoung AdultBiomarkersassociation analysisobstetricpremature birth

Identifiers

PMID25599974
PMCPMC4366311
OpenAlexW2156695500

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.