Evidence map›Paper›PMID 25598227›Full record

ArticleCytometry. Part A : the journal of the International Society for Analytical Cytology2015

Detection of malignant mesothelioma using nuclear structure of mesothelial cells in effusion cytology specimens.

Akif Burak Tosun, Oleksandr Yergiyev, Soheil Kolouri, Jan F Silverman, Gustavo K Rohde

Open access · greenAbstract read
In one paragraph

Article in Cytometry. Part A : the journal of the International Society for Analytical Cytology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Quantifying Nuclear Structures of Digital Pathology Images Across Cancers Using Transport-Based Morphometry.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Deep convolutional neural network-based classification of cancer cells on cytological pleural effusion images.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2022
    Article
  8. Article
  9. Article
  10. Review
  11. A TransportationJournal of mathematical imaging and vision · 2017
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. The Radon Cumulative Distribution Transform and Its Application to Image Classification.IEEE transactions on image processing : a publication of the IEEE Signal Processing Society · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Akif Burak TosunDepartment of Biomedical Engineering, Carnegie Mellon University, Pittsburgh, Pennsylvania, 15213.
Oleksandr Yergiyev
Soheil Kolouri
Jan F Silverman
Gustavo K Rohde
Carnegie Mellon University · USAllegheny General Hospital · US

Funding

TrainingP41GM103712 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FAEDER, JAMES · 2012 to 2021
$16.3M
Image-derived Spatiotemporal Models of Cellular Organization and PerturbationR01GM090033 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI MURPHY, ROBERT F, ROHDE, GUSTAVO KUNDE · 2010 to 2018
$2.4M
Utility of Effusion Cytology and Image Analysis in the Diagnosis of MesotheliomaR21CA188938 · NCI · UNIVERSITY OF VIRGINIA · PI ROHDE, GUSTAVO KUNDE · 2014 to 2015
$193k
NCI NIH HHS R21 CA188938NIGMS NIH HHS P41 GM103712NIGMS NIH HHS R01 GM090033
6 · The paper itself

Abstract

Mesothelioma is a form of cancer generally caused from previous exposure to asbestos. Although it was considered a rare neoplasm in the past, its incidence is increasing worldwide due to extensive use of asbestos. In the current practice of medicine, the gold standard for diagnosing mesothelioma is through a pleural biopsy with subsequent histologic examination of the tissue. The diagnostic tissue should demonstrate the invasion by the tumor and is obtained through thoracoscopy or open thoracotomy, both being highly invasive surgical operations. On the other hand, thoracocentesis, which is removal of effusion fluid from the pleural space, is a far less invasive procedure that can provide material for cytological examination. In this study, we aim at detecting and classifying malignant mesothelioma based on the nuclear chromatin distribution from digital images of mesothelial cells in effusion cytology specimens. Accordingly, a computerized method is developed to determine whether a set of nuclei belonging to a patient is benign or malignant. The quantification of chromatin distribution is performed by using the optimal transport-based linear embedding for segmented nuclei in combination with the modified Fisher discriminant analysis. Classification is then performed through a k-nearest neighborhood approach and a basic voting strategy. Our experiments on 34 different human cases result in 100% accurate predictions computed with blind cross validation. Experimental comparisons also show that the new method can significantly outperform standard numerical feature-type methods in terms of agreement with the clinical diagnosis gold standard. According to our results, we conclude that nuclear structure of mesothelial cells alone may contain enough information to separate malignant mesothelioma from benign mesothelial proliferations.

Indexed as

AsbestosCell NucleusChromatinCytodiagnosisCytological TechniquesEpithelial CellsHumansImage Processing, Computer-AssistedLung NeoplasmsMesotheliomaMesothelioma, MalignantPleuraPleural Effusion, MalignantAsbestosChromatincancer detectionchromatin distributioncytologymesotheliomanuclear structureoptimal transport

Identifiers

PMID25598227
PMCPMC4683592
OpenAlexW2096720629

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.