Evidence map›Paper›PMID 25597857›Full record

ArticleScientific reports2015

Tuning LeSPL-CNR expression by SlymiR157 affects tomato fruit ripening.

Weiwei Chen, Junhua Kong, Tongfei Lai, Kenneth Manning, Chaoqun Wu, Ying Wang, Cheng Qin, Bin Li, Zhiming Yu, Xian Zhang and 13 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
13.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
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  5. Detection of Ethylene Signaling Using Bioinformatics Tools in Plants.Methods in molecular biology (Clifton, N.J.) · 2025
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  6. Virus-InducedPlants (Basel, Switzerland) · 2024
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  7. Review
  8. Epigenetic insights into an epimutantFrontiers in plant science · 2024
    Review
  9. Article
  10. Review
  11. Review
  12. Proteomic Changes in Response toPlants (Basel, Switzerland) · 2022
    Article
  13. Tomato MicroRNAs and Their Functions.International journal of molecular sciences · 2022
    Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Plant physiology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 4 countries.

Weiwei ChenResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Junhua KongResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Tongfei LaiResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Kenneth ManningSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, UK.
Chaoqun WuResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Ying WangResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Cheng QinResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Bin LiResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Zhiming YuResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Xian ZhangResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Meiling HeResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Pengcheng ZhangResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Mei GuClinical Sciences Research Institute, University of Warwick, Coventry CV2 2DX, UK.
Xin YangSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, UK.
Atef Mahammed1] School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK [2] Department of Botany, Faculty of Agriculture, Fayoum University, Fayoum 63514, Egypt.
Chunyang LiSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, UK.
Toba Osman1] School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK [2] Department of Botany, Faculty of Agriculture, Fayoum University, Fayoum 63514, Egypt.
Nongnong ShiResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Huizhong WangResearch Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
Stephen JacksonSchool of Life Sciences, University of Warwick, Coventry CV4 7AL, UK.
Yule LiuMOE Key Laboratory of Bioinformatics, Centre for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Philippe GallusciUMR Fruit Biology and Pathology, University of Bordeaux, INRA, Villenave d'Ornon 33883, France.
Yiguo Hong1] Research Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China [2] School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK.
Hangzhou Normal University · CNUniversity of Warwick · GBFayoum University · EGBiologie du Fruit et Pathologie · FRCenter for Life Sciences · CN

Funding

Role of Mitochondrial CYP2E1 in Chemical Exposure-Driven NeurodegenerationF32ES027306 · NIEHS · DUKE UNIVERSITY · PI HARTMAN, JESSICA HELENE · 2016 to 2018
$171k
Biotechnology and Biological Sciences Research Council BBS/E/H/00YH0271NIEHS NIH HHS 27306C2005
6 · The paper itself

Abstract

In plants, microRNAs (miRNAs) play essential roles in growth, development, yield, stress response and interactions with pathogens. However no miRNA has been experimentally documented to be functionally involved in fruit ripening although many miRNAs have been profiled in fruits. Here we show that SlymiR157 and SlymiR156 differentially modulate ripening and softening in tomato (Solanum lycopersicum). SlymiR157 is expressed and developmentally regulated in normal tomato fruits and in those of the Colourless non-ripening (Cnr) epimutant. It regulates expression of the key ripening gene LeSPL-CNR in a likely dose-dependent manner through miRNA-induced mRNA degradation and translation repression. Viral delivery of either pre-SlymiR157 or mature SlymiR157 results in delayed ripening. Furthermore, qRT-PCR profiling of key ripening regulatory genes indicates that the SlymiR157-target LeSPL-CNR may affect expression of LeMADS-RIN, LeHB1, SlAP2a and SlTAGL1. However SlymiR156 does not affect the onset of ripening, but it impacts fruit softening after the red ripe stage. Our findings reveal that working together with a ripening network of transcription factors, SlymiR157 and SlymiR156 form a critical additional layer of regulatory control over the fruit ripening process in tomato.

Indexed as

FruitGene Expression Regulation, PlantMicroRNAsPlant ProteinsPlants, Genetically ModifiedPromoter Regions, GeneticRNA, PlantSolanum lycopersicumMicroRNAsPlant ProteinsRNA, Plant

Identifiers

PMID25597857
PMCPMC4297963
OpenAlexW1966019788

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.