Evidence map›Paper›PMID 25596817›Full record

ArticleBMC oral health2015

Role of extracytoplasmic function sigma factors in biofilm formation of Porphyromonas gingivalis.

Satosu Onozawa, Yuichiro Kikuchi, Kazuko Shibayama, Eitoyo Kokubu, Masaaki Nakayama, Tetsuyoshi Inoue, Keisuke Nakano, Yukinaga Shibata, Naoya Ohara, Koji Nakayama and 3 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC oral health, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. A PorX/PorY and σmSphere · 2021
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The Three Bacterial Lines of Defense against Antimicrobial Agents.International journal of molecular sciences · 2015
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Satosu Onozawa
Yuichiro KikuchiOral Health Science Center, Tokyo Dental College, 2-9-18, Misaki-cho, Chiyoda-ku, Tokyo, Japan. yukikuchi@tdc.ac.jp.
Kazuko Shibayama
Eitoyo Kokubu
Masaaki Nakayama
Tetsuyoshi Inoue
Keisuke Nakano
Yukinaga Shibata
Naoya Ohara
Koji Nakayama
Kazuyuki Ishihara
Toshiyuki Kawakami
Hiromasa Hasegawa
Matsumoto Dental University · JPTokyo Dental College · JPOkayama University · JPNagasaki University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPorphyromonas gingivalis has been implicated as a major pathogen in the development and progression of chronic periodontitis. P. gingivalis biofilm formation in the subgingival crevice plays an important role in the ability of the bacteria to tolerate stress signals outside the cytoplasmic membrane. Some bacteria use a distinct subfamily of sigma factors to regulate their extracytoplasmic functions (the ECF subfamily). The objective of this study was to determine if P. gingivalis ECF sigma factors affect P. gingivalis biofilm formation.

methodsTo elucidate the role of ECF sigma factors in P. gingivalis, chromosomal mutants carrying a disruption of each ECF sigma factor-encoding gene were constructed. Bacterial growth curves were measured by determining the turbidity of bacterial cultures. The quantity of biofilm growing on plates was evaluated by crystal violet staining.

resultsComparison of the growth curves of wild-type P. gingivalis strain 33277 and the ECF mutants indicated that the growth rate of the mutants was slightly lower than that of the wild-type strain. The PGN_0274- and PGN_1740-defective mutants had increased biofilm formation compared with the wild-type (p < 0.001); however, the other ECF sigma factor mutants or the complemented strains did not enhance biofilm formation.

conclusionThese results suggest that PGN_0274 and PGN_1740 play a key role in biofilm formation by P. gingivalis.

Indexed as

BiofilmsBacterial ProteinsBacteriological TechniquesColoring AgentsDNA-Binding ProteinsDrug Resistance, BacterialGene DeletionGentian VioletHumansMethyltransferasesMutationNephelometry and TurbidimetryPorphyromonas gingivalisSigma FactorBacterial ProteinsColoring AgentsDNA-Binding ProteinsGentian VioletMethyltransferasesrRNA (adenosine-O-2'-)methyltransferaseSigma Factor

Identifiers

PMID25596817
PMCPMC4324044
OpenAlexW1551406603

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.