Evidence map›Paper›PMID 25596185›Full record

ArticleHuman molecular genetics2015

Crystal structure of human persulfide dioxygenase: structural basis of ethylmalonic encephalopathy.

Ilaria Pettinati, Jürgen Brem, Michael A McDonough, Christopher J Schofield

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 63 citations in OpenAlex.

  1. A Dinuclear Iron(II) Persulfide Complex Reacts with OJournal of the American Chemical Society · 2026
    Article
  2. Self-bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Pulling back the mitochondria's iron curtain.npj metabolic health and disease · 2025
    Review
  9. Emerging roles of hydrogen sulfide-metabolizing enzymes in cancer.Redox report : communications in free radical research · 2024
    Review
  10. Mechanism of Intracellular Elemental Sulfur Oxidation inInternational journal of molecular sciences · 2024
    Article
  11. GlialProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Role of Hydrogen Sulfide in Inflammatory Bowel Disease.Antioxidants (Basel, Switzerland) · 2023
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ilaria PettinatiChemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, UK.
Jürgen BremChemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, UK.
Michael A McDonoughChemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, UK michael.mcdonough@chem.ox.ac.uk christopher.schofield@chem.ox.ac.uk.
Christopher J SchofieldChemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, UK michael.mcdonough@chem.ox.ac.uk christopher.schofield@chem.ox.ac.uk.
University of Oxford · GB

Funding

Biotechnology and Biological Sciences Research CouncilMedical Research Council G1100135
6 · The paper itself

Abstract

The ethylmalonic encephalopathy protein 1 (ETHE1) catalyses the oxygen-dependent oxidation of glutathione persulfide (GSSH) to give persulfite and glutathione. Mutations to the hETHE1 gene compromise sulfide metabolism leading to the genetic disease ethylmalonic encephalopathy. hETHE1 is a mono-iron binding member of the metallo-β-lactamase (MBL) fold superfamily. We report crystallographic analysis of hETHE1 in complex with iron to 2.6 Å resolution. hETHE1 contains an αββα MBL-fold, which supports metal-binding by the side chains of an aspartate and two histidine residues; three water molecules complete octahedral coordination of the iron. The iron binding hETHE1 enzyme is related to the 'classical' di-zinc binding MBL hydrolases involved in antibiotic resistance, but has distinctive features. The histidine and aspartate residues involved in iron-binding in ETHE1, occupy similar positions to those observed across both the zinc 1 and zinc 2 binding sites in classical MBLs. The active site of hETHE1 is very similar to an ETHE1-like enzyme from Arabidopsis thaliana (60% sequence identity). A channel leading to the active site is sufficiently large to accommodate a GSSH substrate. Some of the observed hETHE1 clinical mutations cluster in the active site region. The structure will serve as a basis for detailed functional and mechanistic studies on ETHE1 and will be useful in the development of selective MBL inhibitors.

Indexed as

Models, MolecularProtein ConformationAmino Acid SequenceBinding SitesBrain Diseases, Metabolic, InbornCatalytic DomainEnzyme ActivationHumansMetalsMitochondrial ProteinsMolecular Docking SimulationMolecular Dynamics SimulationMolecular Sequence DataMutationNucleocytoplasmic Transport ProteinsProtein BindingETHE1 protein, humanMetalsMitochondrial ProteinsNucleocytoplasmic Transport Proteins

Identifiers

PMID25596185
PMCPMC4383860
OpenAlexW2128441706

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.