Evidence map›Paper›PMID 25595557›Full record

ReviewTrends in biotechnology2015

Quantifying on- and off-target genome editing.

Ayal Hendel, Eli J Fine, Gang Bao, Matthew H Porteus

Abstract readReview
In one paragraph

Review in Trends in biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. An improved medium formulation for efficientMolecular therapy. Methods & clinical development · 2023
    Article
  11. Article
  12. Current advances in gene therapy of mitochondrial diseases.Journal of translational medicine · 2022
    Review
  13. Article
  14. CRISPR Therapeutics for Duchenne Muscular Dystrophy.International journal of molecular sciences · 2022
    Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Toward the correction of muscular dystrophy by gene editing.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Review
  20. Review

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ayal HendelDepartment of Pediatrics, Stanford University, Stanford, CA 94305, USA.
Eli J FineDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.
Gang BaoDepartment of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.
Matthew H PorteusDepartment of Pediatrics, Stanford University, Stanford, CA 94305, USA. Electronic address: mporteus@stanford.edu.

Funding

Nanomedicine Center for Nucleoprotein MachinesPN2EY018244 · NEI · RICE UNIVERSITY · PI BAO, GANG · 2006 to 2015
$24.4M
Pre-Clinical Development of Nuclease Mediated Gene Therapy for SCIDR01AI097320 · NIAID · STANFORD UNIVERSITY · PI PORTEUS, MATTHEW H · 2013 to 2017
$1.9M
NEI NIH HHS PN2 EY018244NEI NIH HHS PN2EY018244NIAID NIH HHS R01 AI097320
6 · The paper itself

Abstract

Genome editing with engineered nucleases is a rapidly growing field thanks to transformative technologies that allow researchers to precisely alter genomes for numerous applications including basic research, biotechnology, and human gene therapy. While the ability to make precise and controlled changes at specified sites throughout the genome has grown tremendously in recent years, we still lack a comprehensive and standardized battery of assays for measuring the different genome editing outcomes created at endogenous genomic loci. Here we review the existing assays for quantifying on- and off-target genome editing and describe their utility in advancing the technology. We also highlight unmet assay needs for quantifying on- and off-target genome editing outcomes and discuss their importance for the genome editing field.

Indexed as

Genome, HumanDNA End-Joining RepairEndonucleasesGene ExpressionGenes, ReporterGenetic EngineeringGenetic LociGenetic TherapyGreen Fluorescent ProteinsHomologous RecombinationHumansLuminescent ProteinsMutagenesis, Site-DirectedRed Fluorescent ProteinZinc FingersEndonucleasesenhanced green fluorescent proteinGreen Fluorescent ProteinsLuminescent ProteinsRed Fluorescent ProteinCRISPR/Cas9gene editinggene targetinghomologous recombinationnonhomologous end-joiningRNA-guided endonucleasesTALENsZFNs

Identifiers

PMID25595557
PMCPMC4308725

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.