Evidence map›Paper›PMID 25593300›Full record

ArticleMolecular cancer research : MCR2015

Next-Gen Sequencing Exposes Frequent MED12 Mutations and Actionable Therapeutic Targets in Phyllodes Tumors.

Andi K Cani, Daniel H Hovelson, Andrew S McDaniel, Seth Sadis, Michaela J Haller, Venkata Yadati, Anmol M Amin, Jarred Bratley, Santhoshi Bandla, Paul D Williams and 7 more

Open access · greenAbstract read
In one paragraph

Article in Molecular cancer research : MCR, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 134 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. MED12 dysregulation: insights into cancer and therapeutic resistance.Naunyn-Schmiedeberg's archives of pharmacology · 2025
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Prognostic factors of breast phyllodes tumors.Histology and histopathology · 2023
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Fibroepithelial tumours of the breast-a review.Virchows Archiv : an international journal of pathology · 2022
    Review
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Andi K CaniDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan.
Daniel H HovelsonDepartment of Computational Medicine and Bioinformatics University of Michigan Medical School, Ann Arbor, Michigan.
Andrew S McDanielDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan.
Seth SadisLife Sciences Solutions, ThermoFisher Scientific, Ann Arbor, Michigan.
Michaela J HallerDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan.
Venkata YadatiDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan.
Anmol M AminDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan.
Jarred BratleyDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan.
Santhoshi BandlaLife Sciences Solutions, ThermoFisher Scientific, Ann Arbor, Michigan.
Paul D WilliamsLife Sciences Solutions, ThermoFisher Scientific, Ann Arbor, Michigan.
Kate RhodesLife Sciences Solutions, ThermoFisher Scientific, Carlsbad, California.
Chia-Jen LiuDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan.
Michael J QuistDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan. Department of Pathology, Oregon Health and Sciences University, Portland, Oregon.
Daniel R RhodesLife Sciences Solutions, ThermoFisher Scientific, Ann Arbor, Michigan.
Catherine S GrassoDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan. Department of Pathology, Oregon Health and Sciences University, Portland, Oregon.
Celina G KleerDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan.
Scott A TomlinsDepartment of Pathology, Michigan Center for Translational Pathology, Ann Arbor, Michigan. Department of Urology, University of Michigan Medical School, Ann Arbor, Michigan. Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, Michigan. tomlinss@umich.edu.
Michigan Center for Translational Pathology · USThermo Fisher Scientific (Israel) · ILOregon Health & Science University · USUniversity of Michigan · US

Funding

Tissue/InformaticsP50CA186786 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Ganesh S Palapattu · 2014 to 2026
$27.6M
Role of CCN6 (WISP3) in the Progression and Metastasis of Breast Cancer.R01CA125577 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Celina G Kleer · 2008 to 2026
$5.5M
NCI NIH HHS P50 CA186786NCI NIH HHS R01 CA125577
6 · The paper itself

Abstract

unlabelledPhyllodes tumors are rare fibroepithelial tumors with variable clinical behavior accounting for a small subset of all breast neoplasms, yet little is known about the genetic alterations that drive tumor initiation and/or progression. Here, targeted next-generation sequencing (NGS) was used to identify somatic alterations in formalin-fixed paraffin-embedded (FFPE) patient specimens from malignant, borderline, and benign cases. NGS revealed mutations in mediator complex subunit 12 (MED12) affecting the G44 hotspot residue in the majority (67%) of cases spanning all three histologic grades. In addition, loss-of-function mutations in p53 (TP53) as well as deleterious mutations in the tumor suppressors retinoblastoma (RB1) and neurofibromin 1 (NF1) were identified exclusively in malignant tumors. High-level copy-number alterations (CNA) were nearly exclusively confined to malignant tumors, including potentially clinically actionable gene amplifications in IGF1R and EGFR. Taken together, this study defines the genomic landscape underlying phyllodes tumor development, suggests potential molecular correlates to histologic grade, expands the spectrum of human tumors with frequent recurrent MED12 mutations, and identifies IGF1R and EGFR as potential therapeutic targets in malignant cases. IMPLICATIONS: Integrated genomic sequencing and mutational profiling provides insight into the molecular origin of phyllodes tumors and indicates potential druggable targets in malignant disease. Visual Overview: http://mcr.aacrjournals.org/content/early/2015/04/02/1541-7786.MCR-14-0578/F1.large.jpg.

Indexed as

MutationBreast NeoplasmsDNA Copy Number VariationsErbB ReceptorsFemaleGene AmplificationHigh-Throughput Nucleotide SequencingHumansMediator ComplexNeurofibromin 1Phyllodes TumorReceptor, IGF Type 1Receptors, SomatomedinRetinoblastoma ProteinSequence Analysis, DNATumor Suppressor Protein p53EGFR protein, humanErbB ReceptorsIGF1R protein, humanMED12 protein, humanMediator ComplexNeurofibromin 1Receptor, IGF Type 1Receptors, SomatomedinRetinoblastoma ProteinTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID25593300
PMCPMC4936398
OpenAlexW2142907255

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.