Evidence map›Paper›PMID 25592960›Full record

ArticleJournal of experimental & clinical cancer research : CR2015

Analysis of the ORFK1 hypervariable regions reveal distinct HHV-8 clustering in Kaposi's sarcoma and non-Kaposi's cases.

Paola Cordiali-Fei, Elisabetta Trento, Marta Giovanetti, Alessandra Lo Presti, Alessandra Latini, Massimo Giuliani, Giovanna D'Agosto, Valentina Bordignon, Eleonora Cella, Francesca Farchi and 8 more

Open access · goldAbstract read
In one paragraph

Article in Journal of experimental & clinical cancer research : CR, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
9.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 159 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Paola Cordiali-FeiClinical Pathology and Microbiology, San Gallicano Dermatology Institute, Via Elio Chianesi 53, Rome, 00144, Italy. cordiali-fei@ifo.it.
Elisabetta Trento
Marta Giovanetti
Alessandra Lo Presti
Alessandra Latini
Massimo Giuliani
Giovanna D'Agosto
Valentina Bordignon
Eleonora Cella
Francesca Farchi
Carmela Ferraro
Ilaria Lesnoni La Parola
Carlo Cota
Isabella Sperduti
Antonella Vento
Antonio Cristaudo
Massimo Ciccozzi
Fabrizio Ensoli
San Gallicano Hospital · ITIstituto Superiore di Sanità · ITUniversità Campus Bio-Medico · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundClassical Kaposi's Sarcoma (cKS) is a rare vascular tumor, which develops in subjects infected with Human Herpesvirus-8 (HHV-8). Beside the host predisposing factors, viral genetic variants might possibly be related to disease development. The aim of this study was to identify HHV-8 variants in patients with cKS or in HHV-8 infected subjects either asymptomatic or with cKS-unrelated cutaneous lymphoproliferative disorders.

methodsThe VR1 and VR2 regions of the ORF K1 sequence were analyzed in samples (peripheral blood and/or lesional tissue) collected between 2000 and 2010 from 27 subjects with HHV-8 infection, established by the presence of anti-HHV-8 antibodies. On the basis of viral genotyping, a phylogenetic analysis and a time-scaled evaluation were performed.

resultsTwo main clades of HHV-8, corresponding to A and C subtypes, were identified. Moreover, for each subtype, two main clusters were found distinctively associated to cKS or non-cKS subjects. Selective pressure analysis showed twelve sites of the K1 coding gene (VR1 and VR2 regions) under positive selective pressure and one site under negative pressure.

conclusionThus, present data suggest that HHV-8 genetic variants may influence the susceptibility to cKS in individuals with HHV-8 infection.

Indexed as

Genetic VariationAdultAgedAged, 80 and overCluster AnalysisFemaleHerpesviridae InfectionsHerpesvirus 8, HumanHumansMaleMembrane ProteinsMiddle AgedPhylogenySarcoma, KaposiViral Envelope ProteinsViral ProteinsK1 protein, Human herpesvirus 8Membrane ProteinsViral Envelope ProteinsViral Proteins

Identifiers

PMID25592960
PMCPMC4311464
OpenAlexW2169416451

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.