Evidence map›Paper›PMID 25592838›Full record

ArticleBiochimica et biophysica acta2015

A mechanistic role of Helix 8 in GPCRs: Computational modeling of the dopamine D2 receptor interaction with the GIPC1-PDZ-domain.

Ozge Sensoy, Harel Weinstein

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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  11. Lipid rafts are required for effective renal DFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  12. Review
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  14. Article
  15. Apelinergic System Structure and Function.Comprehensive Physiology · 2017
    Review
  16. Article
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  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Ozge SensoyDepartment of Physiology and Biophysics, Weill Medical College of Cornell University, New York, NY, USA.
Harel WeinsteinDepartment of Physiology and Biophysics, Weill Medical College of Cornell University, New York, NY, USA. Electronic address: haw2002@med.cornell.edu.

Funding

Structure of the Dopamine D2-Like Receptor Binding SitesR01MH054137 · NIMH · NEW YORK STATE PSYCHIATRIC INSTITUTE DBA RESEARCH FOUNDATION FOR MENTAL HYGIENE, INC · PI JAVITCH, JONATHAN A · 1995 to 2025
$12.0M
HALLUCINOGENS IN SPECIFIC SIGNALING AND CIRCUITRYP01DA012923 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI WEINSTEIN, HAREL · 2000 to 2011
$8.6M
Functional Properties of Protein Segments in Receptors and TransportersR01DA015170 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI JAVITCH, JONATHAN A, WEINSTEIN, HAREL · 2002 to 2013
$2.8M
Molecular Determinants for the Action of PsychostimulantsK05DA022413 · NIDA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JAVITCH, JONATHAN A · 2007 to 2016
$1.3M
NIDA NIH HHS K05 DA022413NIDA NIH HHS P01 DA012923NIDA NIH HHS R01 DA015170NIMH NIH HHS R01 MH054137
6 · The paper itself

Abstract

Helix-8 (Hx8) is a structurally conserved amphipathic helical motif in class-A GPCRs, adjacent to the C-terminal sequence that is responsible for PDZ-domain-recognition. The Hx8 segment in the dopamine D2 receptor (D2R) constitutes the C-terminal segment and we investigate its role in the function of D2R by studying the interaction with the PDZ-containing GIPC1 using homology models based on the X-ray structures of very closely related analogs: the D3R for the D2R model, and the PDZ domain of GIPC2 for GIPC1-PDZ. The mechanism of this interaction was investigated with all-atom unbiased molecular dynamics (MD) simulations that reveal the role of the membrane in maintaining the helical fold of Hx8, and with biased MD simulations to elucidate the energy drive for the interaction with the GIPC1-PDZ. We found that it becomes more favorable energetically for Hx8 to adopt the extended conformation observed in all PDZ-ligand complexes when it moves away from the membrane, and that C-terminus palmitoylation of D2R enhanced membrane penetration by the Hx8 backbone. De-palmitoylation enables Hx8 to move out into the aqueous environment for interaction with the PDZ domain. All-atom unbiased MD simulations of the full D2R-GIPC1-PDZ complex in sphingolipid/cholesterol membranes show that the D2R carboxyl C-terminus samples the region of the conserved GFGL motif located on the carboxylate-binding loop of the GIPC1-PDZ, and the entire complex distances itself from the membrane interface. Together, these results outline a likely mechanism of Hx8 involvement in the interaction of the GPCR with PDZ-domains in the course of signaling.

Indexed as

Molecular Dynamics SimulationPDZ DomainsAdaptor Proteins, Signal TransducingBinding SitesCell MembraneComputational BiologyHumansLigandsModels, MolecularPalmitic AcidProtein BindingProtein Structure, SecondaryReceptors, Dopamine D2Adaptor Proteins, Signal TransducingGIPC1 protein, humanLigandsPalmitic AcidReceptors, Dopamine D2Biased molecular dynamicsGPCR–PDZ interactionGPCR signalingMembrane insertion GPCR–membrane interactionPalmitoylation and depalmitoylationSteered molecular dynamics simulation

Identifiers

PMID25592838
PMCPMC4336197

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.