Evidence map›Paper›PMID 25592762›Full record

ArticleMicrobial cell factories2015

High crude violacein production from glucose by Escherichia coli engineered with interactive control of tryptophan pathway and violacein biosynthetic pathway.

Ming-Yue Fang, Chong Zhang, Song Yang, Jin-Yu Cui, Pei-Xia Jiang, Kai Lou, Masaaki Wachi, Xin-Hui Xing

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 97 citations in OpenAlex.

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  17. Microbial pigments: Learning from Himalayan perspective to industrial applications.Journal of industrial microbiology & biotechnology · 2022
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  19. Developing methylotrophic microbial platforms for a methanol-based bioindustry.Frontiers in bioengineering and biotechnology · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Ming-Yue FangDepartment of Chemical Engineering, Tsinghua University, Beijing, 10084, China. fangmingyue88@gmail.com.
Chong ZhangDepartment of Chemical Engineering, Tsinghua University, Beijing, 10084, China. chongzhang@mail.tsinghua.edu.cn.
Song YangSchool of Life Sciences, Qingdao Agriculture University, Qingdao, 266109, China. yangsong15@hotmail.com.
Jin-Yu CuiSchool of Life Sciences, Qingdao Agriculture University, Qingdao, 266109, China. cuijinyu212@hotmail.com.
Pei-Xia JiangInstitute of Microbiology, Chinese Academy of Science, Beijing, 10084, China. jpx@mail.tsinghua.edu.cn.
Kai LouInstitute of Microbiology, Xinjiang Academy of Agricultural Science, Urumqi, 830000, China. loukai02@mail.tsinghua.edu.cn.
Masaaki WachiDepartment of Bioengineering, Tokyo Institute of Technology, Yokohama, 226-8503, Japan. mwachi@bio.titech.ac.jp.
Xin-Hui XingDepartment of Chemical Engineering, Tsinghua University, Beijing, 10084, China. xhxing@mail.tsinghua.edu.cn.
Tsinghua University · CNQingdao Agricultural University · CNInstitute of Microbiology · CNTokyo Institute of Technology · JPXinjiang Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAs bacteria-originated crude violacein, a natural indolocarbazole product, consists of violacein and deoxyviolacein, and can potentially be a new type of natural antibiotics, the reconstruction of an effective metabolic pathway for crude violacein (violacein and deoxyviolacein mixture) synthesis directly from glucose in Escherichia coli was of importance for developing industrial production process.

resultsStrains with a multivariate module for varied tryptophan productivities were firstly generated by combinatorial knockout of trpR/tnaA/pheA genes and overexpression of two key genes trpEfbr /trpD from the upstream tryptophan metabolic pathway. Then, the gene cluster of violacein biosynthetic pathway was introduced downstream of the generated tryptophan pathway. After combination of these two pathways, maximum crude violacein production directly from glucose by E. coli B2/pED+pVio was realized with a titer of 0.6±0.01 g L(-1) in flask culture, which was four fold higher than that of the control without the tryptophan pathway up-regulation. In a 5-L bioreactor batch fermentation with glucose as the carbon source, the recombinant E. coli B2/pED+pVio exhibited a crude violacein titer of 1.75 g L(-1) and a productivity of 36 mg L(-1) h(-1), which was the highest titer and productivity reported so far under the similar culture conditions without tryptophan addition.

conclusionMetabolic pathway analysis using 13C labeling illustrated that the up-regulated tryptophan supply enhanced tryptophan metabolism from glucose, whereas the introduction of violacein pathway drew more carbon flux from glucose to tryptophan, thereby contributing to the effective production of crude violacein in the engineered E. coli cell factory.

Indexed as

Metabolic EngineeringBacterial ProteinsBiomassCarbon IsotopesCorynebacteriumEscherichia coliGene Knockout TechniquesGlucoseIndolesMultigene FamilyPlasmidsTryptophanBacterial ProteinsCarbon IsotopesGlucoseIndolesTryptophanviolacein

Identifiers

PMID25592762
PMCPMC4306242
OpenAlexW2149868743

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.