Evidence map›Paper›PMID 25590978›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2015

Racial variation in frequency and phenotypes of APC and MUTYH mutations in 6,169 individuals undergoing genetic testing.

Jennifer A Inra, Ewout W Steyerberg, Shilpa Grover, Ashley McFarland, Sapna Syngal, Fay Kastrinos

Open access · bronzeAbstract read
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Adenomatous Polyposis Coli Gene Polyposis-Related Syndromes.The American journal of gastroenterology · 2026
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  13. Identification a nonsense mutation ofExperimental and therapeutic medicine · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Jennifer A InraDivision of Gastroenterology, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Ewout W SteyerbergCenter for Medical Decision Making, Erasmus Medical Center, Rotterdam, The Netherlands.
Shilpa GroverDivision of Gastroenterology, Brigham and Women's Hospital, Boston, Massachusetts, USA.
Ashley McFarlandDivision of Digestive and Liver Diseases, Columbia University Medical Center, New York, New York, USA.
Sapna SyngalDivision of Gastroenterology, Brigham and Women's Hospital, Boston, Massachusetts, USA.ORCID http://orcid.org/0000-0001-5487-7471
Fay KastrinosDivision of Digestive and Liver Diseases, Columbia University Medical Center, New York, New York, USA.
Brigham and Women's Hospital · USColumbia University Irving Medical Center · USErasmus MC · NL

Funding

Validation and extension of the PREMM Model for mismatch repair gene mutationsR01CA132829 · NCI · DANA-FARBER CANCER INST · PI SYNGAL, SAPNA · 2008 to 2022
$5.6M
The Genetics and Prevention of Gastrointestinal CancersK24CA113433 · NCI · DANA-FARBER CANCER INSTITUTE · PI SYNGAL, SAPNA · 2005 to 2014
$1.7M
Assessment of Inherited Colon Cancer Prediction Models in Diverse PopulationsK07CA151769 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI KASTRINOS, FAY · 2010 to 2014
$855k
Genetic Testing and Cancer Screening in Hereditary Cancer SyndromesK07CA120448 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI STOFFEL, ELENA MARTINEZ · 2007 to 2011
$753k
NCI NIH HHS K07 CA120448NCI NIH HHS K07 CA151769NCI NIH HHS K24 CA113433NCI NIH HHS R01 CA132829PHS HHS K24113433
6 · The paper itself

Abstract

purposeThe aim of this study was to assess whether differences in frequency and phenotype of APC and MUTYH mutations exist among racially/ethnically diverse populations.

methodsWe studied 6,169 individuals with a personal and/or family history of colorectal cancer (CRC) and polyps. APC testing involved full sequencing/large rearrangement analysis (FS/LRA); MUTYH involved "panel testing" (for Y165C, G382D mutations) or FS/LRA performed by Myriad Genetics, a commercial laboratory. Subjects were identified as Caucasian, Asian, African American (AA), or other. Statistical tests included χ(2), Fisher's exact test, analysis of variance, and z approximation.

resultsAmong participants, 17.5% had pathogenic APC mutations and 4.8% were biallelic MUTYH carriers. With regard to race/ethnicity, 18% were non-Caucasian, with >100 adenomas and younger ages at adenoma or CRC diagnosis (P < 0.0001) than Caucasians. The overall APC mutation rate was higher in Asians, AAs, and others as compared with Caucasians (25.2, 30.9, 24, and 15.5%, respectively; P < 0.0001) but was similar in all groups when adjusted for polyp burden. More MUTYH biallelic carriers were Caucasian or other than Asian or AA (5, 7, 2.7, and 0.3%, respectively; P < 0.0001). Among Caucasians, 5% were biallelic carriers identified by panel testing versus 2% identified by sequencing/large rearrangement analysis (LRA) (P = 0.002). Among non-Caucasians, 3% undergoing panel testing were biallelic carriers versus 10% identified by sequencing/LRA (P < 0.0002).

conclusionNon-Caucasians undergo genetic testing at more advanced stages of polyposis and/or are younger at CRC/polyp diagnosis. Restricted MUTYH analysis may miss significant numbers of biallelic carriers, particularly in non-Caucasians.

Indexed as

Genetic TestingMutationPhenotypeAdenomatous Polyposis ColiAllelesCross-Sectional StudiesDNA GlycosylasesFemaleHeterozygoteHumansMaleMiddle AgedMutation RateRacial GroupsTumor BurdenDNA GlycosylasesmutY adenine glycosylase

Identifiers

PMID25590978
PMCPMC4904772
OpenAlexW1991643054

What OpenQuestion holds

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LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.