Evidence map›Paper›PMID 25590618›Full record

ArticlePloS one2015

Deep sequencing of the murine olfactory receptor neuron transcriptome.

Ninthujah Kanageswaran, Marilen Demond, Maximilian Nagel, Benjamin S P Schreiner, Sabrina Baumgart, Paul Scholz, Janine Altmüller, Christian Becker, Julia F Doerner, Heike Conrad and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 85 citations in OpenAlex.

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  19. [Influence of coronavirus disease 2019 on the nervous system of children].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Ninthujah KanageswaranRuhr-University Bochum, Department of Cell Physiology, Bochum, Germany.
Marilen DemondRuhr-University Bochum, Department of Cell Physiology, Bochum, Germany; University Duisburg-Essen, Institute of Medical Radiation Biology, Essen, Germany.
Maximilian NagelRuhr-University Bochum, Department of Cell Physiology, Bochum, Germany.
Benjamin S P SchreinerRuhr-University Bochum, Department of Cell Physiology, Bochum, Germany.
Sabrina BaumgartRuhr-University Bochum, Department of Cell Physiology, Bochum, Germany.
Paul ScholzRuhr-University Bochum, Department of Cell Physiology, Bochum, Germany.
Janine AltmüllerUniversity of Köln, Cologne Center for Genomics, Köln, Germany.
Christian BeckerUniversity of Köln, Cologne Center for Genomics, Köln, Germany.
Julia F DoernerRuhr-University Bochum, Department of Cell Physiology, Bochum, Germany.
Heike ConradRuhr-University Bochum, Department of Cell Physiology, Bochum, Germany; Cluster of Excellence and DFG Research Center Nanoscale Microscopy and Molecular Physiology of the Brain (CNMPB), Göttingen, Germany.
Sonja OberlandPharmacology and Toxicology, University Hospital Jena, Drackendorfer Str. 1, 07747 Jena, Germany; Cluster of Excellence NeuroCure, Charité-Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany.
Christian H WetzelUniversity of Regensburg, Department of Psychiatry and Psychotherapy, Molecular Neurosciences, Regensburg, Germany.
Eva M NeuhausPharmacology and Toxicology, University Hospital Jena, Drackendorfer Str. 1, 07747 Jena, Germany; Cluster of Excellence NeuroCure, Charité-Universitätsmedizin Berlin, Charitéplatz 1, 10117 Berlin, Germany.
Hanns HattRuhr-University Bochum, Department of Cell Physiology, Bochum, Germany.
Günter GisselmannRuhr-University Bochum, Department of Cell Physiology, Bochum, Germany.
Ruhr University Bochum · DEJena University Hospital · DEUniversity of Regensburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ability of animals to sense and differentiate among thousands of odorants relies on a large set of olfactory receptors (OR) and a multitude of accessory proteins within the olfactory epithelium (OE). ORs and related signaling mechanisms have been the subject of intensive studies over the past years, but our knowledge regarding olfactory processing remains limited. The recent development of next generation sequencing (NGS) techniques encouraged us to assess the transcriptome of the murine OE. We analyzed RNA from OEs of female and male adult mice and from fluorescence-activated cell sorting (FACS)-sorted olfactory receptor neurons (ORNs) obtained from transgenic OMP-GFP mice. The Illumina RNA-Seq protocol was utilized to generate up to 86 million reads per transcriptome. In OE samples, nearly all OR and trace amine-associated receptor (TAAR) genes involved in the perception of volatile amines were detectably expressed. Other genes known to participate in olfactory signaling pathways were among the 200 genes with the highest expression levels in the OE. To identify OE-specific genes, we compared olfactory neuron expression profiles with RNA-Seq transcriptome data from different murine tissues. By analyzing different transcript classes, we detected the expression of non-olfactory GPCRs in ORNs and established an expression ranking for GPCRs detected in the OE. We also identified other previously undescribed membrane proteins as potential new players in olfaction. The quantitative and comprehensive transcriptome data provide a virtually complete catalogue of genes expressed in the OE and present a useful tool to uncover candidate genes involved in, for example, olfactory signaling, OR trafficking and recycling, and proliferation.

Indexed as

AnimalsFemaleFlow CytometryHigh-Throughput Nucleotide SequencingMaleMiceMice, TransgenicOlfactory MucosaOlfactory PathwaysOlfactory Receptor NeuronsSignal TransductionTranscriptome

Identifiers

PMID25590618
PMCPMC4295871
OpenAlexW2161341195

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.