Evidence map›Paper›PMID 25588660›Full record

ArticleJournal of clinical microbiology2015

Detection of mycobacteria, Mycobacterium avium subspecies, and Mycobacterium tuberculosis complex by a novel tetraplex real-time PCR assay.

Iker A Sevilla, Elena Molina, Natalia Elguezabal, Valentín Pérez, Joseba M Garrido, Ramón A Juste

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Droplet digital PCR as alternative to microbiological culture forFrontiers in cellular and infection microbiology · 2024
    Article
  8. Article
  9. Utilisation of Actiphage in combination with ISJournal of veterinary research · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Identification of Nontuberculous Mycobacteria in Patients with Pulmonary Diseases in Gyeongnam, Korea, Using Multiplex PCR and Multigene Sequence-Based Analysis.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2021
    Article
  18. Application of the Actiphage® Assay to Detect ViableFrontiers in veterinary science · 2021
    Article
  19. Review
  20. Detection of Wood Mice (Microorganisms · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Iker A SevillaDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain isevilla@neiker.net.ORCID http://orcid.org/0000-0003-3968-3390
Elena MolinaDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain.
Natalia ElguezabalDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain.
Valentín PérezDepartamento de Sanidad Animal, Facultad de Veterinaria, Universidad de León, León, Spain.
Joseba M GarridoDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain.
Ramón A JusteDepartamento de Sanidad Animal, NEIKER-Tecnalia, Derio, Biscay, Spain.ORCID http://orcid.org/0000-0001-6037-5873

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium tuberculosis complex, Mycobacterium avium, and many other nontuberculous mycobacteria are worldwide distributed microorganisms of major medical and veterinary importance. Considering the growing epidemiologic significance of wildlife-livestock-human interrelation, developing rapid detection tools of high specificity and sensitivity is vital to assess their presence and accelerate the process of diagnosing mycobacteriosis. Here we describe the development and evaluation of a novel tetraplex real-time PCR for simultaneous detection of Mycobacterium genus, M. avium subspecies, and M. tuberculosis complex in an internally monitored single assay. The method was evaluated using DNA from mycobacterial (n = 38) and nonmycobacterial (n = 28) strains, tissues spiked with different CFU amounts of three mycobacterial species (n = 57), archival clinical samples (n = 233), and strains isolated from various hosts (n = 147). The minimum detectable DNA amount per reaction was 50 fg for M. bovis BCG and M. kansasii and 5 fg for M. avium subsp. hominissuis. When spiked samples were analyzed, the method consistently detected as few as 100 to 1,000 mycobacterial CFU per gram. The sensitivity and specificity values for the panel of clinical samples were 97.5 and 100% using a verified culture-based method as the reference method. The assays performed on clinical isolates confirmed these results. This PCR was able to identify M. avium and M. tuberculosis complex in the same sample in one reaction. In conclusion, the tetraplex real-time PCR we designed represents a highly specific and sensitive tool for the detection and identification of mycobacteria in routine laboratory diagnosis with potential additional uses.

Indexed as

Molecular Diagnostic TechniquesMultiplex Polymerase Chain ReactionMycobacterium aviumMycobacterium tuberculosisReal-Time Polymerase Chain ReactionTuberculosisAnimalsCattleGoatsHumansSensitivity and SpecificitySheepSus scrofa

Identifiers

PMID25588660
PMCPMC4390653

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.