Evidence map›Paper›PMID 25587568›Full record

ArticleTheScientificWorldJournal2014

Transcriptome sequencing in a Tibetan barley landrace with high resistance to powdery mildew.

Xing-Quan Zeng, Xiao-Mei Luo, Yu-Lin Wang, Qi-Jun Xu, Li-Jun Bai, Hong-Jun Yuan, Nyima Tashi

Abstract read
In one paragraph

Article in TheScientificWorldJournal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xing-Quan ZengBarley Improvement and Yak Breeding Key Laboratory, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa, Tibet 850002, China.
Xiao-Mei LuoCollege of Forestry, Sichuan Agricultural University, Yaan, Sichuan 625014, China.
Yu-Lin WangBarley Improvement and Yak Breeding Key Laboratory, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa, Tibet 850002, China.
Qi-Jun XuBarley Improvement and Yak Breeding Key Laboratory, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa, Tibet 850002, China.
Li-Jun BaiCollege of Forestry, Sichuan Agricultural University, Yaan, Sichuan 625014, China.
Hong-Jun YuanBarley Improvement and Yak Breeding Key Laboratory, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa, Tibet 850002, China.
Nyima TashiBarley Improvement and Yak Breeding Key Laboratory, Tibet Academy of Agricultural and Animal Husbandry Sciences, Lhasa, Tibet 850002, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hulless barley is an important cereal crop worldwide, especially in Tibet of China. However, this crop is usually susceptible to powdery mildew caused by Blumeria graminis f. sp. hordei. In this study, we aimed to understand the functions and pathways of genes involved in the disease resistance by transcriptome sequencing of a Tibetan barley landrace with high resistance to powdery mildew. A total of 831 significant differentially expressed genes were found in the infected seedlings, covering 19 functions. Either "cell," "cell part," and "extracellular region" in the cellular component category or "binding" and "catalytic" in the category of molecular function as well as "metabolic process" and "cellular process" in the biological process category together demonstrated that these functions may be involved in the resistance to powdery mildew of the hulless barley. In addition, 330 KEGG pathways were found using BLASTx with an E-value cut-off of <10(-5). Among them, three pathways, namely, "photosynthesis," "plant-pathogen interaction," and "photosynthesis-antenna proteins" had significant matches in the database. Significant expressions of the three pathways were detected at 24 h, 48 h, and 96 h after infection, respectively. These results indicated a complex process of barley response to powdery mildew infection.

Indexed as

AscomycotaDatabases, GeneticDisease ResistanceExonsGene Expression Regulation, PlantGene OntologyHordeumIntronsPlant DiseasesSequence Analysis, RNATibetTranscriptome

Identifiers

PMID25587568
PMCPMC4284937

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.