Evidence map›Paper›PMID 25587355›Full record

ArticleEpigenetics & chromatin2014

HP1β-dependent recruitment of UBF1 to irradiated chromatin occurs simultaneously with CPDs.

Lenka Stixová, Petra Sehnalová, Soňa Legartová, Jana Suchánková, Tereza Hrušková, Stanislav Kozubek, Dmitry V Sorokin, Pavel Matula, Ivan Raška, Aleš Kovařík and 2 more

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
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  5. NCells · 2020
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  7. UVA irradiation strengthened an interaction between UBF1/2 proteins and H4K20 di-/tri-methylation.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2019
    Article
  8. Article
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  11. Review
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  13. Nucleolar Reorganization Upon Site-Specific Double-Strand Break Induction.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2016
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Lenka StixováAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic.
Petra SehnalováAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic.
Soňa LegartováAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic.
Jana SuchánkováAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic.
Tereza HruškováAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic.
Stanislav KozubekAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic.
Dmitry V SorokinAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic ; Faculty of Informatics, Masaryk University, Botanická 68a, 602 00 Brno, Czech Republic.
Pavel MatulaAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic ; Faculty of Informatics, Masaryk University, Botanická 68a, 602 00 Brno, Czech Republic.
Ivan RaškaInstitute of Cellular Biology and Pathology, the First Faculty of Medicine, Charles University in Prague, Albertov 4, 128 01 Prague, Czech Republic.
Aleš KovaříkAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic.
Jaroslav FulnečekAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic.
Eva BártováAcademy of Sciences of the Czech Republic, Institute of Biophysics, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic.
Czech Academy of Sciences · CZCharles University · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe repair of spontaneous and induced DNA lesions is a multistep process. Depending on the type of injury, damaged DNA is recognized by many proteins specifically involved in distinct DNA repair pathways.

resultsWe analyzed the DNA-damage response after ultraviolet A (UVA) and γ irradiation of mouse embryonic fibroblasts and focused on upstream binding factor 1 (UBF1), a key protein in the regulation of ribosomal gene transcription. We found that UBF1, but not nucleolar proteins RPA194, TCOF, or fibrillarin, was recruited to UVA-irradiated chromatin concurrently with an increase in heterochromatin protein 1β (HP1β) level. Moreover, Förster Resonance Energy Transfer (FRET) confirmed interaction between UBF1 and HP1β that was dependent on a functional chromo shadow domain of HP1β. Thus, overexpression of HP1β with a deleted chromo shadow domain had a dominant-negative effect on UBF1 recruitment to UVA-damaged chromatin. Transcription factor UBF1 also interacted directly with DNA inside the nucleolus but no interaction of UBF1 and DNA was confirmed outside the nucleolus, where UBF1 recruitment to DNA lesions appeared simultaneously with cyclobutane pyrimidine dimers; this occurrence was cell-cycle-independent.

conclusionsWe propose that the simultaneous presence and interaction of UBF1 and HP1β at DNA lesions is activated by the presence of cyclobutane pyrimidine dimers and mediated by the chromo shadow domain of HP1β. This might have functional significance for nucleotide excision repair.

Indexed as

DNA-damage responseDNA repairIrradiationLive-cell studiesNucleolusUBF1

Identifiers

PMID25587355
PMCPMC4293114
OpenAlexW2126382478

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.