Evidence map›Paper›PMID 25586378›Full record

ArticleThe EMBO journal2015

TFG clusters COPII-coated transport carriers and promotes early secretory pathway organization.

Adam Johnson, Nilakshee Bhattacharya, Michael Hanna, Janice G Pennington, Amber L Schuh, Lei Wang, Marisa S Otegui, Scott M Stagg, Anjon Audhya

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed, 1 pooled it
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 1 synthesis or guideline pooled it, 118 citations in OpenAlex.

  1. Stay in touch with the endoplasmic reticulum.Science China. Life sciences · 2024
    Pooled it
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  15. Organizing principles underlying COPII-mediated transport.Current opinion in cell biology · 2025
    Review
  16. Article
  17. Cell type-specific gene therapy confers protection against motor neuron disease caused by a TFG variant.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Article
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Adam JohnsonDepartment of Biomolecular Chemistry, University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA.
Nilakshee BhattacharyaInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL, USA.
Michael HannaDepartment of Biomolecular Chemistry, University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA.
Janice G PenningtonDepartments of Botany and Genetics, University of Wisconsin-Madison, Madison, WI, USA.
Amber L SchuhDepartment of Biomolecular Chemistry, University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA.
Lei WangDepartment of Biomolecular Chemistry, University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA.
Marisa S OteguiDepartments of Botany and Genetics, University of Wisconsin-Madison, Madison, WI, USA.
Scott M StaggInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL, USA Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, USA.
Anjon AudhyaDepartment of Biomolecular Chemistry, University of Wisconsin-Madison School of Medicine and Public Health, Madison, WI, USA audhya@wisc.edu.
University of Wisconsin–Madison · USFlorida State University · US

Funding

Molecular Mechanisms that Regulate Lysosomal Protein TransportR01GM088151 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI AUDHYA, ANJON · 2010 to 2019
$3.0M
Regulatory mechanisms that control vesicle secretion at the endoplasmic reticulumR01GM110567 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI AUDHYA, ANJON · 2015 to 2019
$1.8M
The Structure and Assembly of the COPII CoatR01GM086892 · NIGMS · FLORIDA STATE UNIVERSITY · PI STAGG, SCOTT M · 2010 to 2014
$1.3M
ACQUISITION OF MASS SPECTROMETER FOR CORE FACILITYS10RR013790 · NCRR · UNIVERSITY OF WISCONSIN MADISON · PI RAINES, RONALD T · 1999 to 1999
–
NCRR NIH HHS S10 RR013790NCRR NIH HHS S10 RR13790NIGMS NIH HHS GM086892NIGMS NIH HHS GM088151NIGMS NIH HHS R01 GM086892NIGMS NIH HHS R01 GM088151NIGMS NIH HHS R01 GM110567
6 · The paper itself

Abstract

In mammalian cells, cargo-laden secretory vesicles leave the endoplasmic reticulum (ER) en route to ER-Golgi intermediate compartments (ERGIC) in a manner dependent on the COPII coat complex. We report here that COPII-coated transport carriers traverse a submicron, TFG (Trk-fused gene)-enriched zone at the ER/ERGIC interface. The architecture of TFG complexes as determined by three-dimensional electron microscopy reveals the formation of flexible, octameric cup-like structures, which are able to self-associate to generate larger polymers in vitro. In cells, loss of TFG function dramatically slows protein export from the ER and results in the accumulation of COPII-coated carriers throughout the cytoplasm. Additionally, the tight association between ER and ERGIC membranes is lost in the absence of TFG. We propose that TFG functions at the ER/ERGIC interface to locally concentrate COPII-coated transport carriers and link exit sites on the ER to ERGIC membranes. Our findings provide a new mechanism by which COPII-coated carriers are retained near their site of formation to facilitate rapid fusion with neighboring ERGIC membranes upon uncoating, thereby promoting interorganellar cargo transport.

Indexed as

AnimalsBiological TransportCell LineChlorocebus aethiopsCircular DichroismCOP-Coated VesiclesElectroporationEndoplasmic ReticulumFluorescence Recovery After PhotobleachingFluorescent Antibody TechniqueHumansImmunohistochemistryMicroscopy, ElectronMultiprotein ComplexesProteinsRNA, Small InterferingMultiprotein ComplexesProteinsRNA, Small InterferingTFG protein, humanVesicular Transport ProteinsCOPII vesicle transportintrinsic disordersecretionsingle particle electron microscopy

Identifiers

PMID25586378
PMCPMC4369316
OpenAlexW2082423911

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.