Evidence map›Paper›PMID 25586188›Full record

ArticleThe Journal of biological chemistry2015

The N-Glycan cluster from Xanthomonas campestris pv. campestris: a toolbox for sequential plant N-glycan processing.

Stéphanie Dupoiron, Claudine Zischek, Laetitia Ligat, Julien Carbonne, Alice Boulanger, Thomas Dugé de Bernonville, Martine Lautier, Pauline Rival, Matthieu Arlat, Elisabeth Jamet and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. Pathogens (Basel, Switzerland) · 2026
    Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Plants (Basel, Switzerland) · 2022
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Genome-Wide Analysis of β-Galactosidases inFrontiers in microbiology · 2018
    Article
  14. Article
  15. Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Stéphanie DupoironFrom the Université de Toulouse and CNRS, Laboratoire de Recherches en Sciences Végétales, UMR 5546, BP 42617, F-31326 Castanet-Tolosan, France.
Claudine ZischekINRA and CNRS, Laboratoire des Interactions Plantes-Microorganismes, UMR 2594, F-31326 Castanet-Tolosan, France, and.
Laetitia LigatFrom the Université de Toulouse and CNRS, Laboratoire de Recherches en Sciences Végétales, UMR 5546, BP 42617, F-31326 Castanet-Tolosan, France.
Julien CarbonneFrom the Université de Toulouse and CNRS, Laboratoire de Recherches en Sciences Végétales, UMR 5546, BP 42617, F-31326 Castanet-Tolosan, France.
Alice BoulangerINRA and CNRS, Laboratoire des Interactions Plantes-Microorganismes, UMR 2594, F-31326 Castanet-Tolosan, France, and.
Thomas Dugé de BernonvilleINRA and CNRS, Laboratoire des Interactions Plantes-Microorganismes, UMR 2594, F-31326 Castanet-Tolosan, France, and.
Martine LautierINRA and CNRS, Laboratoire des Interactions Plantes-Microorganismes, UMR 2594, F-31326 Castanet-Tolosan, France, and the Université de Toulouse, UPS, F-31062 Toulouse, France.
Pauline RivalFrom the Université de Toulouse and CNRS, Laboratoire de Recherches en Sciences Végétales, UMR 5546, BP 42617, F-31326 Castanet-Tolosan, France, INRA and CNRS, Laboratoire des Interactions Plantes-Microorganismes, UMR 2594, F-31326 Castanet-Tolosan, France, and.
Matthieu ArlatINRA and CNRS, Laboratoire des Interactions Plantes-Microorganismes, UMR 2594, F-31326 Castanet-Tolosan, France, and the Université de Toulouse, UPS, F-31062 Toulouse, France.
Elisabeth JametFrom the Université de Toulouse and CNRS, Laboratoire de Recherches en Sciences Végétales, UMR 5546, BP 42617, F-31326 Castanet-Tolosan, France.
Emmanuelle LauberINRA and CNRS, Laboratoire des Interactions Plantes-Microorganismes, UMR 2594, F-31326 Castanet-Tolosan, France, and emmanuelle.lauber@toulouse.inra.fr.
Cécile AlbenneFrom the Université de Toulouse and CNRS, Laboratoire de Recherches en Sciences Végétales, UMR 5546, BP 42617, F-31326 Castanet-Tolosan, France.
Centre National de la Recherche Scientifique · FRUniversité Fédérale de Toulouse Midi-Pyrénées · FRLaboratoire de Recherche en Sciences Végétales · FRLaboratoire des Interactions Plantes Micro-Organismes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

N-Glycans are widely distributed in living organisms but represent only a small fraction of the carbohydrates found in plants. This probably explains why they have not previously been considered as substrates exploited by phytopathogenic bacteria during plant infection. Xanthomonas campestris pv. campestris, the causal agent of black rot disease of Brassica plants, possesses a specific system for GlcNAc utilization expressed during host plant infection. This system encompasses a cluster of eight genes (nixE to nixL) encoding glycoside hydrolases (GHs). In this paper, we have characterized the enzymatic activities of these GHs and demonstrated their involvement in sequential degradation of a plant N-glycan using a N-glycopeptide containing two GlcNAcs, three mannoses, one fucose, and one xylose (N2M3FX) as a substrate. The removal of the α-1,3-mannose by the α-mannosidase NixK (GH92) is a prerequisite for the subsequent action of the β-xylosidase NixI (GH3), which is involved in the cleavage of the β-1,2-xylose, followed by the α-mannosidase NixJ (GH125), which removes the α-1,6-mannose. These data, combined to the subcellular localization of the enzymes, allowed us to propose a model of N-glycopeptide processing by X. campestris pv. campestris. This study constitutes the first evidence suggesting N-glycan degradation by a plant pathogen, a feature shared with human pathogenic bacteria. Plant N-glycans should therefore be included in the repertoire of molecules putatively metabolized by phytopathogenic bacteria during their life cycle.

Indexed as

alpha-MannosidaseBrassicaGlycoside HydrolasesHumansPlant DiseasesPolysaccharidesXanthomonas campestrisXylosidasesalpha-Mannosidaseexo-1,4-beta-D-xylosidaseGlycoside HydrolasesPolysaccharidesXylosidasesBacteriaCarbohydrate ProcessingEnzyme KineticsGlycoside HydrolaseN-Linked GlycosylationPhytopathogenPlantXanthomonas

Identifiers

PMID25586188
PMCPMC4358245
OpenAlexW2145049641

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.