Evidence map›Paper›PMID 25585963›Full record

ArticleThe journal of physiological sciences : JPS2015

Oscillation of cAMP and Ca(2+) in cardiac myocytes: a systems biology approach.

Takehisa Kamide, Satoshi Okumura, Samik Ghosh, Yoko Shinoda, Yasumasa Mototani, Yoshiki Ohnuki, Huiling Jin, Wenqian Cai, Kenji Suita, Itaru Sato and 7 more

Open access · goldAbstract read
In one paragraph

Article in The journal of physiological sciences : JPS, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Status of βReviews in cardiovascular medicine · 2023
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Epac activation inhibits IL-6-induced cardiac myocyte dysfunction.The journal of physiological sciences : JPS · 2018
    Article
  8. Unknown biological effects of L-glucose, ALA, and PUFA.The journal of physiological sciences : JPS · 2017
    Review
  9. Arrhythmogenic effect of androgens on the rat heart.The journal of physiological sciences : JPS · 2017
    Article
  10. Article
  11. Article
  12. Article
  13. Effects of food diameter on bite size per mouthful and chewing behavior.The journal of physiological sciences : JPS · 2016
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 1 country.

Takehisa KamideCardiovascular Research Institute, Yokohama City University Graduate School of Medicine, 3-9 Fukuura, Kanazawa-ku, Yokohama, 236-0004, Japan.
Satoshi Okumura
Samik Ghosh
Yoko Shinoda
Yasumasa Mototani
Yoshiki Ohnuki
Huiling Jin
Wenqian Cai
Kenji Suita
Itaru Sato
Masanari Umemura
Takayuki Fujita
Utako Yokoyama
Motohiko Sato
Kazuharu Furutani
Hiroaki Kitano
Yoshihiro Ishikawa
Cardiovascular Institute Hospital · JPTsurumi University · JPYokohama City University · JPAichi Medical University · JPOkinawa Institute of Science and Technology Graduate University · JPOsaka University · JPSystems Biology Institute · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyclic adenosine monophosphate (cAMP) and Ca(2+) levels may oscillate in harmony within excitable cells; a mathematical oscillation loop model, the Cooper model, of these oscillations was developed two decades ago. However, in that model all adenylyl cyclase (AC) isoforms were assumed to be inhibited by Ca(2+), and it is now known that the heart expresses multiple AC isoforms, among which the type 5/6 isoforms are Ca(2+)-inhibitable whereas the other five (AC2, 3, 4, 7, and 9) are not. We used a computational systems biology approach with CellDesigner simulation software to develop a comprehensive graphical map and oscillation loop model for cAMP and Ca(2+). This model indicated that Ca(2+)-mediated inhibition of AC is essential to create oscillations of Ca(2+) and cAMP, and the oscillations were not altered by incorporation of phosphodiesterase-mediated cAMP hydrolysis or PKA-mediated inhibition of AC into the model. More importantly, they were created but faded out immediately in the co-presence of Ca(2+)-noninhibitable AC isoforms. Because the subcellular locations of AC isoforms are different, spontaneous cAMP and Ca(2+) oscillations may occur within microdomains containing only Ca(2+)-inhibitable isoforms in cardiac myocytes, which might be necessary for fine tuning of excitation-contraction coupling.

Indexed as

Adenylyl CyclasesCalciumCalcium SignalingComputational BiologyCyclic AMPCyclic AMP-Dependent Protein KinasesExcitation Contraction CouplingHydrolysisModels, TheoreticalMyocytes, CardiacPhosphoric Diester HydrolasesProtein IsoformsSoftwareSystems BiologyAdenylyl CyclasesCalciumCyclic AMPCyclic AMP-Dependent Protein KinasesPhosphoric Diester HydrolasesProtein Isoforms

Identifiers

PMID25585963
PMCPMC10717207
OpenAlexW2032053463

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.