Evidence map›Paper›PMID 25585696›Full record

ArticleEuropean journal of human genetics : EJHG2015

Genome-wide analysis identifies a role for common copy number variants in specific language impairment.

Nuala H Simpson, Fabiola Ceroni, Rose H Reader, Laura E Covill, Julian C Knight, SLI Consortium, Elizabeth R Hennessy, Patrick F Bolton, Gina Conti-Ramsden, Anne O'Hare and 3 more

Open access · hybridAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Genome-Wide Association Study of Motor Coordination.Frontiers in human neuroscience · 2021
    Article
  10. Article
  11. Article
  12. Nicotinic acetylcholine receptor subunit αJournal of neurophysiology · 2019
    Article
  13. Article
  14. Casein kinase 1α: biological mechanisms and theranostic potential.Cell communication and signaling : CCS · 2018
    Review
  15. Article
  16. Genetic Approaches to Understanding Psychiatric Disease.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2017
    Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 2 countries.

Nuala H SimpsonWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Fabiola CeroniWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Rose H ReaderWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Laura E CovillWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Julian C KnightWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
SLI Consortium
Elizabeth R HennessyUniversity Child Health and DMDE, University of Aberdeen, Aberdeen, UK.
Patrick F BoltonDepartments of Child and Adolescent Psychiatry, Social, Genetic and Developmental Psychiatry Centre, Institute of Psychiatry, King's College London, London, UK.
Gina Conti-RamsdenSchool of Psychological Sciences, University of Manchester, Manchester, UK.
Anne O'HareDepartment of Reproductive and Developmental Sciences, University of Edinburgh, Edinburgh, UK.
Gillian BairdChildren's Neurosciences Department, Evelina Children's Hospital and King's Health Partners, London, UK.
Simon E FisherMax Planck Institute for Psycholinguistics, Nijmegen, The Netherlands.
Dianne F NewburyWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK.
Centre for Human Genetics · GBUniversity of Oxford · GBKing's College London · GBKings Health Partners · GBRadboud University Nijmegen · NLUniversity of Aberdeen · GBUniversity of Edinburgh · GBUniversity of Manchester · GB

Funding

Medical Research Council G1000569Medical Research Council G1000569/1Medical Research Council MR/J003719/1Wellcome Trust 060774Wellcome Trust 074318Wellcome Trust 076566Wellcome Trust 088891Wellcome Trust 090532/Z/09/Z
6 · The paper itself

Abstract

An exploratory genome-wide copy number variant (CNV) study was performed in 127 independent cases with specific language impairment (SLI), their first-degree relatives (385 individuals) and 269 population controls. Language-impaired cases showed an increased CNV burden in terms of the average number of events (11.28 vs 10.01, empirical P=0.003), the total length of CNVs (717 vs 513 Kb, empirical P=0.0001), the average CNV size (63.75 vs 51.6 Kb, empirical P=0.0005) and the number of genes spanned (14.29 vs 10.34, empirical P=0.0007) when compared with population controls, suggesting that CNVs may contribute to SLI risk. A similar trend was observed in first-degree relatives regardless of affection status. The increased burden found in our study was not driven by large or de novo events, which have been described as causative in other neurodevelopmental disorders. Nevertheless, de novo CNVs might be important on a case-by-case basis, as indicated by identification of events affecting relevant genes, such as ACTR2 and CSNK1A1, and small events within known micro-deletion/-duplication syndrome regions, such as chr8p23.1. Pathway analysis of the genes present within the CNVs of the independent cases identified significant overrepresentation of acetylcholine binding, cyclic-nucleotide phosphodiesterase activity and MHC proteins as compared with controls. Taken together, our data suggest that the majority of the risk conferred by CNVs in SLI is via common, inherited events within a 'common disorder-common variant' model. Therefore the risk conferred by CNVs will depend upon the combination of events inherited (both CNVs and SNPs), the genetic background of the individual and the environmental factors.

Indexed as

AgedCase-Control StudiesDNA Copy Number VariationsFemaleGenetic Predisposition to DiseaseGenomeGenome-Wide Association StudyHumansLanguageLanguage DisordersMalePolymorphism, Single Nucleotide

Identifiers

PMID25585696
PMCPMC4592089
OpenAlexW2036175419

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.