Evidence map›Paper›PMID 25584704›Full record

ArticleRNA biology2014

The C-terminal RNA binding motif of HuR is a multi-functional domain leading to HuR oligomerization and binding to U-rich RNA targets.

Rafael M Scheiba, Alain Ibáñez de Opakua, Antonio Díaz-Quintana, Isabel Cruz-Gallardo, Luis A Martínez-Cruz, María L Martínez-Chantar, Francisco J Blanco, Irene Díaz-Moreno

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In one paragraph

Article in RNA biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Journal of chemical information and modeling · 2025
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  6. The molecular genetics of nELAVL in brain development and disease.European journal of human genetics : EJHG · 2023
    Review
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  9. Review
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  13. Article
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  15. Article
  16. Review
  17. Article
  18. The RNA-Binding Protein HuR in Digestive System Tumors.BioMed research international · 2020
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Rafael M Scheibaa Instituto de Bioquímica Vegetal y Fotosíntesis; cicCartuja ; Sevilla , Spain.
Alain Ibáñez de Opakua
Antonio Díaz-Quintana
Isabel Cruz-Gallardo
Luis A Martínez-Cruz
María L Martínez-Chantar
Francisco J Blanco
Irene Díaz-Moreno
Consejo Superior de Investigaciones Científicas · ESCIC bioGUNE · ESIkerbasque · ESUniversity of the Basque Country · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human antigen R (HuR) is a 32 kDa protein with 3 RNA Recognition Motifs (RRMs), which bind to Adenylate and uridylate Rich Elements (AREs) of mRNAs. Whereas the N-terminal and central domains (RRM1 and RRM2) are essential for AREs recognition, little is known on the C-terminal RRM3 beyond its implication in HuR oligomerization and apoptotic signaling. We have developed a detergent-based strategy to produce soluble RRM3 for structural studies. We have found that it adopts the typical RRM fold, does not interact with the RRM1 and RRM2 modules, and forms dimers in solution. Our NMR measurements, combined with Molecular Dynamics simulations and Analytical Ultracentrifugation experiments, show that the protein dimerizes through a helical region that contains the conserved W261 residue. We found that HuR RRM3 binds to 5'-mer U-rich RNA stretches through the solvent exposed side of its β-sheet, located opposite to the dimerization site. Upon mimicking phosphorylation by the S318D replacement, RRM3 mutant shows less ability to recognize RNA due to an electrostatic repulsion effect with the phosphate groups. Our study brings new insights of HuR RRM3 as a domain involved in protein oligomerization and RNA interaction, both functions regulated by 2 surfaces on opposite sides of the RRM domain.

Indexed as

Amino Acid MotifsBinding SitesCircular DichroismELAV ProteinsHumansMagnetic Resonance SpectroscopyModels, MolecularMolecular Dynamics SimulationProtein BindingProtein ConformationProtein MultimerizationRNARNA-Binding ProteinsELAV ProteinsRNARNA-Binding ProteinsAREs, Adenylate and uridylate Rich ElementsAU, Analytical UltracentrifugationCARM1, Coactivator associated Arginine Methyltransferase 1CD, Circular DichroismCdk1, Cyclin-dependent kinase 1Chk2, Checkpoint kinase 2dimerizationELAV1, Embryonic Lethal Abnormal Vision system human homolog 1EMSA, Electrophoretic Mobility Shift AssayFIR, FBP-Interacting RepressorFL, Full-Length, HNS, HuR Nucleocytoplasmic Shuttling SequencehnRNP1, heterogeneous nuclear RiboNucleoprotein C proteinHSQC, Heteronuclear Single-Quantum CorrelationHuman antigen R (HuR)HuR, Human antigen RMD, Molecular DynamicsNMR, Nuclear Magnetic ResonanceNOE, Nuclear Overhauser EffectNuclear Magnetic Resonance (NMR)PCA, Principal Component AnalysisPKCα, Protein Kinase C αPKCδ, Protein Kinase C δPMSF, PhenylMethylSulfonyl FluoridePTB, Polypyrimidine Tract Binding proteinRBPs, RNA Binding ProteinsRNA bindingRNA binding protein (RBP)RNA recognition motif (RRM)RRMs, RNA Recognition MotifsSerine PhosphorylationSPR, Surface Plasmon ResonanceWT, Wild-Type

Identifiers

PMID25584704
PMCPMC4615805
OpenAlexW1578727895

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.