Evidence map›Paper›PMID 25584625›Full record

ArticleeLife2015

Native architecture of the Chlamydomonas chloroplast revealed by in situ cryo-electron tomography.

Benjamin D Engel, Miroslava Schaffer, Luis Kuhn Cuellar, Elizabeth Villa, Jürgen M Plitzko, Wolfgang Baumeister

Erratum issuedAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 157 papers.

0numbers the graph read from it
0cells of the map it votes in
157citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

157 citing papers in PubMed.

  1. Article
  2. Review
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  6. RBMP2 shapes specialized membranes for CObioRxiv : the preprint server for biology · 2026
    Article
  7. SAGA1 and SAGA2 localize the starch sheath to the pyrenoid inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Architectural and biochemical advances in understanding microbial COThe Plant journal : for cell and molecular biology · 2026
    Review
  9. Review
  10. Article
  11. Plant structural biology: Emerging technologies and future biological insights.The Plant journal : for cell and molecular biology · 2026
    Review
  12. Article
  13. A structural perspective on α-glucan catabolism in oxygenic phototrophs.The Plant journal : for cell and molecular biology · 2026
    Review
  14. SAGA1 and SAGA2 localize the starch sheath to the pyrenoid inbioRxiv : the preprint server for biology · 2026
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Proteomic analysis of the pyrenoid-traversing membranes ofbioRxiv : the preprint server for biology · 2025
    Article

97 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Benjamin D EngelDepartment of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID http://orcid.org/0000-0002-0941-4387
Miroslava SchafferDepartment of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.
Luis Kuhn CuellarDepartment of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.
Elizabeth VillaDepartment of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.
Jürgen M PlitzkoDepartment of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.
Wolfgang BaumeisterDepartment of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chloroplast function is orchestrated by the organelle's intricate architecture. By combining cryo-focused ion beam milling of vitreous Chlamydomonas cells with cryo-electron tomography, we acquired three-dimensional structures of the chloroplast in its native state within the cell. Chloroplast envelope inner membrane invaginations were frequently found in close association with thylakoid tips, and the tips of multiple thylakoid stacks converged at dynamic sites on the chloroplast envelope, implicating lipid transport in thylakoid biogenesis. Subtomogram averaging and nearest neighbor analysis revealed that RuBisCO complexes were hexagonally packed within the pyrenoid, with ~15 nm between their centers. Thylakoid stacks and the pyrenoid were connected by cylindrical pyrenoid tubules, physically bridging the sites of light-dependent photosynthesis and light-independent carbon fixation. Multiple parallel minitubules were bundled within each pyrenoid tubule, possibly serving as conduits for the targeted one-dimensional diffusion of small molecules such as ATP and sugars between the chloroplast stroma and the pyrenoid matrix.

Indexed as

ChlamydomonasChloroplastsCryoelectron MicroscopyElectron Microscope TomographyIntracellular MembranesRibulose-Bisphosphate CarboxylaseStarchStromal CellsThylakoidsRibulose-Bisphosphate CarboxylaseStarchbiophysicsChlamydomonaschloroplastcryo-electron tomographyfocused ion beamplant biologyRuBisCOstructural biologythylakoid

Identifiers

PMID25584625
PMCPMC4292175

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.