Evidence map›Paper›PMID 25583510›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

An HD-domain phosphodiesterase mediates cooperative hydrolysis of c-di-AMP to affect bacterial growth and virulence.

TuAnh Ngoc Huynh, Shukun Luo, Daniel Pensinger, John-Demian Sauer, Liang Tong, Joshua J Woodward

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed
8.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed, 200 citations in OpenAlex.

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  16. The role ofJournal of bacteriology · 2024
    Article
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  18. Microbiology and molecular biology reviews : MMBR · 2024
    Review
  19. Bacterial cell volume regulation and the importance of cyclic di-AMP.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  20. Article

68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

TuAnh Ngoc HuynhDepartment of Microbiology, University of Washington, Seattle, WA 98195;
Shukun LuoDepartment of Biological Sciences, Columbia University, New York, NY 10027; and.
Daniel PensingerDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, WI 53706.
John-Demian SauerDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, WI 53706.
Liang TongDepartment of Biological Sciences, Columbia University, New York, NY 10027; and jjwoodwa@uw.edu ltong@columbia.edu.
Joshua J WoodwardDepartment of Microbiology, University of Washington, Seattle, WA 98195; jjwoodwa@uw.edu ltong@columbia.edu.
Columbia University · USUniversity of Washington · USUniversity of Wisconsin–Madison · US

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Listeria monocytogenes physiology and host pathogen interactionsR01AI116669 · NIAID · UNIVERSITY OF WASHINGTON · PI WOODWARD, JOSHUA · 2015 to 2024
$4.4M
Structural biology of enzymes in fatty acid metabolismR01DK067238 · NIDDK · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2004 to 2012
$2.6M
Replacement of an aging X-ray diffraction system for protein crystallographyS10OD012018 · OD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2012 to 2012
$405k
C-di-AMP signaling in Listeria monocytogenes host pathogen interactionsR56AI108698 · NIAID · UNIVERSITY OF WASHINGTON · PI WOODWARD, JOSHUA · 2014 to 2014
$341k
NIAID NIH HHS R01 AI116669NIAID NIH HHS R56 AI108698NIAID NIH HHS R56AI108698NIDDK NIH HHS R01 DK067238NIDDK NIH HHS R01DK067238NIGMS NIH HHS P41 GM111244NIH HHS S10 OD012018NIH HHS S10OD012018
6 · The paper itself

Abstract

The nucleotide cyclic di-3',5'- adenosine monophosphate (c-di-AMP) was recently identified as an essential and widespread second messenger in bacterial signaling. Among c-di-AMP-producing bacteria, altered nucleotide levels result in several physiological defects and attenuated virulence. Thus, a detailed molecular understanding of c-di-AMP metabolism is of both fundamental and practical interest. Currently, c-di-AMP degradation is recognized solely among DHH-DHHA1 domain-containing phosphodiesterases. Using chemical proteomics, we identified the Listeria monocytogenes protein PgpH as a molecular target of c-di-AMP. Biochemical and structural studies revealed that the PgpH His-Asp (HD) domain bound c-di-AMP with high affinity and specifically hydrolyzed this nucleotide to 5'-pApA. PgpH hydrolysis activity was inhibited by ppGpp, indicating a cross-talk between c-di-AMP signaling and the stringent response. Genetic analyses supported coordinated regulation of c-di-AMP levels in and out of the host. Intriguingly, a L. monocytogenes mutant that lacks c-di-AMP phosphodiesterases exhibited elevated c-di-AMP levels, hyperinduced a host type-I IFN response, and was significantly attenuated for infection. Furthermore, PgpH homologs, which belong to the 7TMR-HD family, are widespread among hundreds of c-di-AMP synthesizing microorganisms. Thus, PgpH represents a broadly conserved class of c-di-AMP phosphodiesterase with possibly other physiological functions in this crucial signaling network.

Indexed as

VirulenceAmino Acid SequenceCyclic AMPHydrolysisListeria monocytogenesModels, MolecularMolecular Sequence DataPhosphoric Diester HydrolasesProtein BindingCyclic AMPPhosphoric Diester Hydrolasesbacterial signal transductionc-di-AMPHD domainListeria monocytogenesphosphodiesterase

Identifiers

PMID25583510
PMCPMC4343097
OpenAlexW2113420364

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.