Evidence map›Paper›PMID 25583506›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Visualization of the type III secretion sorting platform of Shigella flexneri.

Bo Hu, Dustin R Morado, William Margolin, John R Rohde, Olivia Arizmendi, Wendy L Picking, William D Picking, Jun Liu

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Oligomeric assembly of the gatekeeper InvE orchestrates hierarchical type III protein secretion inProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. FEMS microbes · 2025
    Article
  15. Mapping the functional B-cell epitopes ofApplied and environmental microbiology · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. A Tale aboutMicroorganisms · 2023
    Review
  20. Article

69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Bo HuDepartments of Pathology and Laboratory Medicine and.
Dustin R MoradoDepartments of Pathology and Laboratory Medicine and.
William MargolinMicrobiology & Molecular Genetics, University of Texas Medical School at Houston, Houston, TX 77030;
John R RohdeDepartment of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada B3H 4R2; and.
Olivia ArizmendiDepartment of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS 66047.
Wendy L PickingDepartment of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS 66047.
William D PickingDepartment of Pharmaceutical Chemistry, University of Kansas, Lawrence, KS 66047 jun.liu.1@uth.tmc.edu picking@ku.edu.
Jun LiuDepartments of Pathology and Laboratory Medicine and jun.liu.1@uth.tmc.edu picking@ku.edu.

Funding

Structure-Function Relationships in the Spirochetal Flagellar MotorR01AI087946 · NIAID · YALE UNIVERSITY · PI LIU, JUN · 2010 to 2025
$6.6M
Targeting and assembly of E. coli division proteinsR01GM061074 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MARGOLIN, WILLIAM · 2000 to 2018
$5.7M
Structural basis of phage infection and DNA ejectionR01GM110243 · NIGMS · YALE UNIVERSITY · PI LIU, JUN, MOLINEUX, IAN J · 2014 to 2024
$3.1M
Structural basis of signaling between bacterial chemoreceptors and flagellaR01GM107629 · NIGMS · YALE UNIVERSITY · PI LIU, JUN · 2014 to 2017
$1.5M
Direct Detector for a 300kV Cryoelectron MicroscopeS10OD016279 · OD · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI WAXHAM, M. NEAL · 2013 to 2013
$599k
Canadian Institutes of Health Research MOP-102594NIAID NIH HHS R01 AI087946NIAID NIH HHS R01AI087946NIGMS NIH HHS R01 GM061074NIGMS NIH HHS R01 GM107629NIGMS NIH HHS R01GM107629NIGMS NIH HHS R01 GM110243NIGMS NIH HHS R01GM110243NIGMS NIH HHS R01GM61074NIH HHS S10 OD016279NIH HHS S10OD016279
6 · The paper itself

Abstract

Bacterial type III secretion machines are widely used to inject virulence proteins into eukaryotic host cells. These secretion machines are evolutionarily related to bacterial flagella and consist of a large cytoplasmic complex, a transmembrane basal body, and an extracellular needle. The cytoplasmic complex forms a sorting platform essential for effector selection and needle assembly, but it remains largely uncharacterized. Here we use high-throughput cryoelectron tomography (cryo-ET) to visualize intact machines in a virulent Shigella flexneri strain genetically modified to produce minicells capable of interaction with host cells. A high-resolution in situ structure of the intact machine determined by subtomogram averaging reveals the cytoplasmic sorting platform, which consists of a central hub and six spokes, with a pod-like structure at the terminus of each spoke. Molecular modeling of wild-type and mutant machines allowed us to propose a model of the sorting platform in which the hub consists mainly of a hexamer of the Spa47 ATPase, whereas the MxiN protein comprises the spokes and the Spa33 protein forms the pods. Multiple contacts among those components are essential to align the Spa47 ATPase with the central channel of the MxiA protein export gate to form a unique nanomachine. The molecular architecture of the Shigella type III secretion machine and its sorting platform provide the structural foundation for further dissecting the mechanisms underlying type III secretion and pathogenesis and also highlight the major structural distinctions from bacterial flagella.

Indexed as

Models, MolecularShigella flexneriAdenosine TriphosphatasesAnimalsBacterial Secretion SystemsCryoelectron MicroscopyErythrocytesFlagellaSheepStructure-Activity RelationshipAdenosine TriphosphatasesBacterial Secretion SystemsSpa47 protein, Shigella flexnericryo-electron tomographyinjectisomenanomachinepathogen–host interactionprotein secretion

Identifiers

PMID25583506
PMCPMC4313800

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.